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  5. GSVIVT01010980001

GSVIVT01010980001


Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG0000421 (Archaeplastida) Phylogenetic Tree(s): OG0000421_tree ,
OG_05_0006096 (LandPlants) Phylogenetic Tree(s): OG_05_0006096_tree ,
OG_06_0003875 (SeedPlants) Phylogenetic Tree(s): OG_06_0003875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010980001
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
Gb_03032 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Gb_14935 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Mp2g10620.1 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Pp3c26_12270V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Archaeplastida
Pp3c4_29750V3.1 No alias zinc finger protein 1 0.02 Archaeplastida
Solyc01g067550.3.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
Solyc06g008740.3.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
Solyc09g074640.3.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
MF GO:0008375 acetylglucosaminyltransferase activity IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 96 120
IPR000571 Znf_CCCH 50 75
IPR000571 Znf_CCCH 142 166
IPR000571 Znf_CCCH 343 367
IPR000571 Znf_CCCH 297 322
No external refs found!