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Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).U1C snRNP component
Gene families : OG0006423 (Archaeplastida) Phylogenetic Tree(s): OG0006423_tree ,
OG_05_0006641 (LandPlants) Phylogenetic Tree(s): OG_05_0006641_tree ,
OG_06_0007654 (SeedPlants) Phylogenetic Tree(s): OG_06_0007654_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01011011001 | |
| Cluster | HCCA: Cluster_132 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre09.g401300 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | Archaeplastida | |
| Gb_41077 | No alias | component U1C of U1 small nuclear ribonucleoprotein... | 0.03 | Archaeplastida | |
| Mp4g05150.1 | No alias | component U1C of U1 small nuclear ribonucleoprotein... | 0.02 | Archaeplastida | |
| Solyc06g008860.3.1 | No alias | component U1C of U1 small nuclear ribonucleoprotein... | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003830 | beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | IEP | Neighborhood |
| CC | GO:0005741 | mitochondrial outer membrane | IEP | Neighborhood |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Neighborhood |
| BP | GO:0006487 | protein N-linked glycosylation | IEP | Neighborhood |
| MF | GO:0008097 | 5S rRNA binding | IEP | Neighborhood |
| BP | GO:0015985 | energy coupled proton transport, down electrochemical gradient | IEP | Neighborhood |
| BP | GO:0015986 | ATP synthesis coupled proton transport | IEP | Neighborhood |
| CC | GO:0016592 | mediator complex | IEP | Neighborhood |
| CC | GO:0017053 | transcriptional repressor complex | IEP | Neighborhood |
| CC | GO:0019867 | outer membrane | IEP | Neighborhood |
| CC | GO:0031968 | organelle outer membrane | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| CC | GO:0032993 | protein-DNA complex | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044427 | chromosomal part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| CC | GO:0044815 | DNA packaging complex | IEP | Neighborhood |
| CC | GO:0098588 | bounding membrane of organelle | IEP | Neighborhood |
| CC | GO:0098805 | whole membrane | IEP | Neighborhood |
| MF | GO:0140103 | catalytic activity, acting on a glycoprotein | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013085 | U1-CZ_Znf_C2H2 | 1 | 38 |
| No external refs found! |