GSVIVT01011061001


Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.mTERF4 splicing factor


Gene families : OG0001159 (Archaeplastida) Phylogenetic Tree(s): OG0001159_tree ,
OG_05_0001847 (LandPlants) Phylogenetic Tree(s): OG_05_0001847_tree ,
OG_06_0001563 (SeedPlants) Phylogenetic Tree(s): OG_06_0001563_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011061001
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00234800 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00025p00060270 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AT2G21710 EMB2219 Mitochondrial transcription termination factor family protein 0.03 Archaeplastida
AT4G02990 No alias Mitochondrial transcription termination factor family protein 0.03 Archaeplastida
Gb_07758 No alias transcription factor (mTERF) 0.03 Archaeplastida
Gb_36311 No alias transcription factor (mTERF). mTERF4 plastidial RNA... 0.06 Archaeplastida
LOC_Os05g33500.1 No alias transcription factor (mTERF). mTERF4 plastidial RNA... 0.02 Archaeplastida
LOC_Os07g04230.1 No alias transcription factor (mTERF) 0.07 Archaeplastida
MA_15876g0010 No alias transcription factor (mTERF). mTERF4 plastidial RNA... 0.06 Archaeplastida
MA_78196g0010 No alias transcription factor (mTERF). mTERF4 plastidial RNA... 0.03 Archaeplastida
Pp3c1_25410V3.1 No alias Mitochondrial transcription termination factor family protein 0.04 Archaeplastida
Smo92242 No alias RNA biosynthesis.organelle... 0.05 Archaeplastida
Solyc01g109630.4.1 No alias transcription factor (mTERF) 0.04 Archaeplastida
Solyc04g005630.3.1 No alias transcription factor (mTERF). mTERF4 plastidial RNA... 0.03 Archaeplastida
Zm00001e023745_P001 No alias transcription factor (mTERF). mTERF mitochondrial RNA... 0.02 Archaeplastida
Zm00001e027106_P001 No alias transcription factor (mTERF). mTERF4 plastidial RNA... 0.07 Archaeplastida
Zm00001e032771_P001 No alias transcription factor (mTERF) 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006788 heme oxidation IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR003690 MTERF 167 475
No external refs found!