GSVIVT01011061001

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.mTERF4 splicing factor

Gene families : OG0001159 (Archaeplastida) Phylogenetic Tree(s): OG0001159_tree ,
OG_05_0001847 (LandPlants) Phylogenetic Tree(s): OG_05_0001847_tree ,
OG_06_0001563 (SeedPlants) Phylogenetic Tree(s): OG_06_0001563_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01011061001
Cluster	HCCA: Cluster_155

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00234800	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
AMTR_s00025p00060270	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
AT2G21710	EMB2219	Mitochondrial transcription termination factor family protein	0.03	Archaeplastida
AT4G02990	No alias	Mitochondrial transcription termination factor family protein	0.03	Archaeplastida
Gb_07758	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Gb_36311	No alias	transcription factor (mTERF). mTERF4 plastidial RNA...	0.06	Archaeplastida
LOC_Os05g33500.1	No alias	transcription factor (mTERF). mTERF4 plastidial RNA...	0.02	Archaeplastida
LOC_Os07g04230.1	No alias	transcription factor (mTERF)	0.07	Archaeplastida
MA_15876g0010	No alias	transcription factor (mTERF). mTERF4 plastidial RNA...	0.06	Archaeplastida
MA_78196g0010	No alias	transcription factor (mTERF). mTERF4 plastidial RNA...	0.03	Archaeplastida
Pp3c1_25410V3.1	No alias	Mitochondrial transcription termination factor family protein	0.04	Archaeplastida
Smo92242	No alias	RNA biosynthesis.organelle...	0.05	Archaeplastida
Solyc01g109630.4.1	No alias	transcription factor (mTERF)	0.04	Archaeplastida
Solyc04g005630.3.1	No alias	transcription factor (mTERF). mTERF4 plastidial RNA...	0.03	Archaeplastida
Zm00001e023745_P001	No alias	transcription factor (mTERF). mTERF mitochondrial RNA...	0.02	Archaeplastida
Zm00001e027106_P001	No alias	transcription factor (mTERF). mTERF4 plastidial RNA...	0.07	Archaeplastida
Zm00001e032771_P001	No alias	transcription factor (mTERF)	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
MF	GO:0004392	heme oxygenase (decyclizing) activity	IEP	Neighborhood
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006788	heme oxidation	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Neighborhood
BP	GO:0042168	heme metabolic process	IEP	Neighborhood
BP	GO:0042440	pigment metabolic process	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003690	MTERF	167	475

External Links

No external refs found!

GSVIVT01011061001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation