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  5. GSVIVT01012705001

GSVIVT01012705001


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UPT6 assembly factor


Gene families : OG0004917 (Archaeplastida) Phylogenetic Tree(s): OG0004917_tree ,
OG_05_0005805 (LandPlants) Phylogenetic Tree(s): OG_05_0005805_tree ,
OG_06_0008751 (SeedPlants) Phylogenetic Tree(s): OG_06_0008751_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012705001
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT4G28200 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.1 Archaeplastida
Cpa|evm.model.tig00000571.29 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
Cre10.g442000 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
LOC_Os02g01350.1 No alias SSU processome assembly factor (UTP6) 0.09 Archaeplastida
MA_10435952g0010 No alias SSU processome assembly factor (UTP6) 0.08 Archaeplastida
Mp7g18520.1 No alias SSU processome assembly factor (UTP6) 0.09 Archaeplastida
Pp3c5_4450V3.1 No alias No annotation 0.07 Archaeplastida
Solyc02g032920.3.1 No alias no hits & (original description: none) 0.1 Archaeplastida
Zm00001e011580_P001 No alias SSU processome assembly factor (UTP6) 0.06 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA Interproscan
MF GO:0030515 snoRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0004004 ATP-dependent RNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008186 RNA-dependent ATPase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031360 intrinsic component of thylakoid membrane IEP Neighborhood
CC GO:0031361 integral component of thylakoid membrane IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
InterPro domains Description Start Stop
IPR013949 Utp6 9 95
No external refs found!