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  5. GSVIVT01013428001

GSVIVT01013428001


Description : Chromatin organisation.chromatin remodeling complexes.additional core components.BAF255/170 component


Gene families : OG0000902 (Archaeplastida) Phylogenetic Tree(s): OG0000902_tree ,
OG_05_0002793 (LandPlants) Phylogenetic Tree(s): OG_05_0002793_tree ,
OG_06_0007321 (SeedPlants) Phylogenetic Tree(s): OG_06_0007321_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013428001
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
LOC_Os04g40420.1 No alias component BAF255/170 of chromatin remodeling complex 0.04 Archaeplastida
MA_10432371g0010 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
MA_10435735g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c10_9060V3.1 No alias SWITCH/sucrose nonfermenting 3C 0.03 Archaeplastida
Solyc04g082760.3.1 No alias component BAF255/170 of chromatin remodeling complex 0.03 Archaeplastida
Zm00001e024548_P001 No alias component BAF255/170 of chromatin remodeling complex 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 241 281
IPR032451 SMARCC_C 407 476
IPR007526 SWIRM 61 146
No external refs found!