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  5. GSVIVT01013553001

GSVIVT01013553001


Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000051 (Archaeplastida) Phylogenetic Tree(s): OG0000051_tree ,
OG_05_0000668 (LandPlants) Phylogenetic Tree(s): OG_05_0000668_tree ,
OG_06_0000736 (SeedPlants) Phylogenetic Tree(s): OG_06_0000736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013553001
Cluster HCCA: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00245920 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
AMTR_s00016p00138470 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
AMTR_s00022p00228970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AMTR_s00065p00184910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
AMTR_s00079p00137860 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
AT1G05805 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.07 Archaeplastida
AT1G68920 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT2G18300 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 Archaeplastida
AT2G42280 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
AT3G23690 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT4G02590 UNE12 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
AT4G34530 CIB1 cryptochrome-interacting basic-helix-loop-helix 1 0.03 Archaeplastida
AT4G36540 BEE2 BR enhanced expression 2 0.03 Archaeplastida
AT5G48560 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT5G50915 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT5G58010 LRL3 LJRHL1-like 3 0.03 Archaeplastida
AT5G62610 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 Archaeplastida
GSVIVT01021787001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
GSVIVT01023783001 No alias External stimuli response.light.UV-A/blue... 0.02 Archaeplastida
Gb_20300 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Gb_21366 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_22201 No alias transcription factor (bHLH) 0.01 Archaeplastida
Gb_28850 No alias transcription factor (bHLH) 0.03 Archaeplastida
Gb_36369 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
LOC_Os02g39140.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os04g41229.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os06g08500.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os08g39630.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os09g25040.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
LOC_Os09g29830.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.01 Archaeplastida
LOC_Os09g33580.2 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
MA_105921g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
MA_158362g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
MA_158850g0010 No alias transcription factor (bHLH) 0.04 Archaeplastida
MA_182616g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.01 Archaeplastida
MA_42080g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
MA_9115341g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
MA_96671g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Mp6g18480.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Mpzg01410.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Pp3c15_4760V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Smo402301 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
Smo444782 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Solyc01g010130.4.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Solyc03g113560.4.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc04g007300.4.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
Solyc04g077480.3.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Solyc05g006650.3.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
Solyc06g065040.4.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc09g097870.4.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Solyc12g010170.2.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc12g098620.2.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Solyc12g100140.3.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e009823_P002 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e010060_P001 No alias transcription factor (bHLH) 0.05 Archaeplastida
Zm00001e010138_P002 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Zm00001e011084_P002 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Zm00001e011866_P002 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e015045_P002 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e018857_P002 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Zm00001e018946_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e021418_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e028489_P003 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
Zm00001e032950_P002 No alias transcription factor (bHLH) 0.05 Archaeplastida
Zm00001e034446_P001 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Zm00001e034528_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e035219_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e036318_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015858 nucleoside transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901642 nucleoside transmembrane transport IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 344 389
No external refs found!