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  5. GSVIVT01013772001

GSVIVT01013772001


Description : Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0015491 (LandPlants) Phylogenetic Tree(s): OG_05_0015491_tree ,
OG_06_0000208 (SeedPlants) Phylogenetic Tree(s): OG_06_0000208_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013772001
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00197210 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.01 Archaeplastida
AT1G80170 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT5G44830 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
GSVIVT01028189001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01033362001 No alias Cell wall.pectin.modification and... 0.02 Archaeplastida
GSVIVT01033364001 No alias Cell wall.pectin.modification and... 0.01 Archaeplastida
LOC_Os01g66710.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
LOC_Os11g14410.1 No alias Polygalacturonase OS=Prunus persica... 0.01 Archaeplastida
MA_10862g0010 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.01 Archaeplastida
MA_127755g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_13282g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.01 Archaeplastida
Smo85947 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc08g014560.3.1 No alias Polygalacturonase OS=Prunus persica... 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 743 1064
IPR002885 Pentatricopeptide_repeat 75 121
IPR002885 Pentatricopeptide_repeat 482 530
IPR002885 Pentatricopeptide_repeat 558 579
IPR002885 Pentatricopeptide_repeat 383 412
IPR002885 Pentatricopeptide_repeat 354 376
IPR002885 Pentatricopeptide_repeat 280 309
IPR002885 Pentatricopeptide_repeat 151 176
No external refs found!