1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01014212001

GSVIVT01014212001


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SF1 pre-mRNA splicing factor


Gene families : OG0001047 (Archaeplastida) Phylogenetic Tree(s): OG0001047_tree ,
OG_05_0001290 (LandPlants) Phylogenetic Tree(s): OG_05_0001290_tree ,
OG_06_0004522 (SeedPlants) Phylogenetic Tree(s): OG_06_0004522_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014212001
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00155240 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 Archaeplastida
AT3G32940 No alias RNA-binding KH domain-containing protein 0.04 Archaeplastida
AT5G51300 No alias splicing factor-related 0.04 Archaeplastida
Cpa|evm.model.tig00001154.10 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Cre09.g386731 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Gb_19921 No alias pre-mRNA splicing factor (SF1) 0.08 Archaeplastida
Gb_23987 No alias pre-mRNA splicing factor (SF1) 0.09 Archaeplastida
Gb_41039 No alias pre-mRNA splicing factor (SF1) 0.06 Archaeplastida
MA_10432977g0010 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
MA_11962g0020 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
MA_160895g0010 No alias pre-mRNA splicing factor (SF1) 0.04 Archaeplastida
Mp7g15050.1 No alias pre-mRNA splicing factor (SF1) 0.06 Archaeplastida
Pp3c11_24710V3.1 No alias splicing factor-related 0.05 Archaeplastida
Pp3c7_10890V3.1 No alias splicing factor-related 0.08 Archaeplastida
Smo77639 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Zm00001e008383_P001 No alias pre-mRNA splicing factor (SF1) 0.09 Archaeplastida
Zm00001e040741_P001 No alias pre-mRNA splicing factor (SF1) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004743 pyruvate kinase activity IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0030955 potassium ion binding IEP Neighborhood
MF GO:0031420 alkali metal ion binding IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR032570 SF1-HH 14 93
IPR004088 KH_dom_type_1 112 184
No external refs found!