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  5. GSVIVT01015347001

GSVIVT01015347001


Description : Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor


Gene families : OG0002726 (Archaeplastida) Phylogenetic Tree(s): OG0002726_tree ,
OG_05_0005043 (LandPlants) Phylogenetic Tree(s): OG_05_0005043_tree ,
OG_06_0006485 (SeedPlants) Phylogenetic Tree(s): OG_06_0006485_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015347001
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00129480 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.03 Archaeplastida
AT4G29060 emb2726 elongation factor Ts family protein 0.13 Archaeplastida
Cpa|evm.model.tig00021464.7 No alias No description available 0.02 Archaeplastida
Cre12.g519180 No alias Protein biosynthesis.organelle translation... 0.02 Archaeplastida
Gb_29672 No alias EF-Ts translation elongation factor 0.05 Archaeplastida
LOC_Os12g35630.1 No alias EF-Ts translation elongation factor 0.06 Archaeplastida
MA_10436165g0010 No alias EF-Ts translation elongation factor 0.03 Archaeplastida
Mp2g23510.1 No alias EF-Ts translation elongation factor 0.05 Archaeplastida
Pp3c3_11830V3.1 No alias elongation factor Ts family protein 0.03 Archaeplastida
Pp3c3_11840V3.1 No alias elongation factor Ts family protein 0.03 Archaeplastida
Smo60716 No alias Protein biosynthesis.organelle translation... 0.03 Archaeplastida
Solyc07g018360.3.1 No alias EF-Ts translation elongation factor 0.05 Archaeplastida
Zm00001e010912_P001 No alias EF-Ts translation elongation factor 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR014039 Transl_elong_EFTs/EF1B_dimer 571 712
IPR014039 Transl_elong_EFTs/EF1B_dimer 827 908
IPR003029 S1_domain 107 175
No external refs found!