- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.AGO siRNA-integrating factor
Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0000677 (LandPlants) Phylogenetic Tree(s): OG_05_0000677_tree ,
OG_06_0000508 (SeedPlants) Phylogenetic Tree(s): OG_06_0000508_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01015464001 | |
| Cluster | HCCA: Cluster_53 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00008p00203090 | evm_27.TU.AmTr_v1... | Chromatin organisation.DNA methylation.canonical... | 0.03 | Archaeplastida | |
| AMTR_s00122p00122810 | evm_27.TU.AmTr_v1... | Chromatin organisation.DNA methylation.canonical... | 0.04 | Archaeplastida | |
| AT2G27040 | AGO4, OCP11 | Argonaute family protein | 0.03 | Archaeplastida | |
| AT2G27880 | AGO5 | Argonaute family protein | 0.02 | Archaeplastida | |
| ChrSy.fgenesh.mRNA.6 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| GSVIVT01012490001 | No alias | Protein argonaute 7 OS=Arabidopsis thaliana | 0.06 | Archaeplastida | |
| Gb_34642 | No alias | RIS-Complex miRNA recruiting factor (AGO1) | 0.03 | Archaeplastida | |
| LOC_Os03g33650.1 | No alias | Protein argonaute 7 OS=Oryza sativa subsp. japonica... | 0.06 | Archaeplastida | |
| LOC_Os06g39640.1 | No alias | RIS-Complex miRNA recruiting factor (AGO1) | 0.03 | Archaeplastida | |
| LOC_Os06g51310.2 | No alias | RIS-Complex miRNA recruiting factor (AGO1) | 0.03 | Archaeplastida | |
| LOC_Os07g09020.1 | No alias | Protein argonaute 14 OS=Oryza sativa subsp. japonica... | 0.03 | Archaeplastida | |
| MA_10427420g0010 | No alias | Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... | 0.03 | Archaeplastida | |
| MA_10428886g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| MA_10429131g0010 | No alias | Protein argonaute 1B OS=Oryza sativa subsp. japonica... | 0.03 | Archaeplastida | |
| MA_159389g0010 | No alias | Protein argonaute 7 OS=Arabidopsis thaliana... | 0.02 | Archaeplastida | |
| MA_246308g0010 | No alias | Protein argonaute 7 OS=Oryza sativa subsp. japonica... | 0.02 | Archaeplastida | |
| MA_594g0010 | No alias | Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... | 0.03 | Archaeplastida | |
| MA_85246g0010 | No alias | Protein argonaute 4A OS=Oryza sativa subsp. japonica... | 0.02 | Archaeplastida | |
| Mp1g18110.1 | No alias | RIS-Complex miRNA recruiting factor (AGO1) | 0.03 | Archaeplastida | |
| Solyc01g010970.3.1 | No alias | Protein argonaute 7 OS=Arabidopsis thaliana... | 0.07 | Archaeplastida | |
| Solyc02g069270.2.1 | No alias | siRNA-binding factor (AGO2) of non-canonical RdDM pathway | 0.04 | Archaeplastida | |
| Solyc09g082830.4.1 | No alias | RIS-Complex miRNA recruiting factor (AGO1) | 0.06 | Archaeplastida | |
| Zm00001e037347_P002 | No alias | RIS-Complex miRNA recruiting factor (AGO1) | 0.03 | Archaeplastida | |
| Zm00001e041452_P004 | No alias | RIS-Complex miRNA recruiting factor (AGO1) | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Neighborhood |
| MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
| MF | GO:0008289 | lipid binding | IEP | Neighborhood |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
| MF | GO:0034061 | DNA polymerase activity | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
| BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0065007 | biological regulation | IEP | Neighborhood |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| MF | GO:0140110 | transcription regulator activity | IEP | Neighborhood |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
| No external refs found! |