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  5. GSVIVT01016335001

GSVIVT01016335001


Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000101 (Archaeplastida) Phylogenetic Tree(s): OG0000101_tree ,
OG_05_0000037 (LandPlants) Phylogenetic Tree(s): OG_05_0000037_tree ,
OG_06_0000043 (SeedPlants) Phylogenetic Tree(s): OG_06_0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016335001
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00076p00127530 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
AMTR_s00080p00153120 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
AT1G06280 LBD2 LOB domain-containing protein 2 0.02 Archaeplastida
AT1G07900 LBD1 LOB domain-containing protein 1 0.03 Archaeplastida
AT1G65620 AS2 Lateral organ boundaries (LOB) domain family protein 0.02 Archaeplastida
AT2G28500 LBD11 LOB domain-containing protein 11 0.04 Archaeplastida
AT2G30130 LBD12, ASL5, PCK1 Lateral organ boundaries (LOB) domain family protein 0.02 Archaeplastida
AT2G30340 LBD13 LOB domain-containing protein 13 0.04 Archaeplastida
AT2G40470 LBD15, ASL11 LOB domain-containing protein 15 0.03 Archaeplastida
AT3G11090 LBD21 LOB domain-containing protein 21 0.04 Archaeplastida
AT3G27650 LBD25 LOB domain-containing protein 25 0.04 Archaeplastida
AT3G47870 LBD27, SCP LOB domain-containing protein 27 0.02 Archaeplastida
GSVIVT01016330001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.06 Archaeplastida
GSVIVT01016332001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01025128001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01032714001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01032752001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
Gb_08465 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_13424 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_16914 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Gb_19383 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_19390 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_20676 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Gb_22180 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Gb_38978 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os09g19950.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_10430986g0010 No alias transcription factor (AS2/LOB) 0.08 Archaeplastida
MA_161608g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_16646g0010 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
MA_290245g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_61242g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_88711g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Pp3c15_22780V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Archaeplastida
Pp3c19_19400V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Archaeplastida
Solyc01g109240.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc02g069440.3.1 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Solyc02g086480.1.1 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Solyc06g005090.3.1 No alias transcription factor (AS2/LOB) 0.07 Archaeplastida
Solyc06g050950.3.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc06g071660.3.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Solyc11g072470.3.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e016785_P005 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e019004_P002 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e030195_P001 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Zm00001e038429_P001 No alias transcription factor (AS2/LOB) 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 42 139
No external refs found!