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  5. GSVIVT01017810001

GSVIVT01017810001


Description : RNA biosynthesis.transcriptional activation.TUB transcription factor


Gene families : OG0000335 (Archaeplastida) Phylogenetic Tree(s): OG0000335_tree ,
OG_05_0000295 (LandPlants) Phylogenetic Tree(s): OG_05_0000295_tree ,
OG_06_0000341 (SeedPlants) Phylogenetic Tree(s): OG_06_0000341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017810001
Cluster HCCA: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00237390 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.04 Archaeplastida
AT3G06380 TLP9, ATTLP9 tubby-like protein 9 0.03 Archaeplastida
AT5G18680 AtTLP11, TLP11 tubby like protein 11 0.03 Archaeplastida
LOC_Os01g64700.2 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os02g47640.1 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os04g59130.1 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os05g48670.1 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os08g01290.5 No alias transcription factor (TUB) 0.03 Archaeplastida
Pp3c24_19540V3.1 No alias tubby like protein 3 0.02 Archaeplastida
Solyc01g067680.3.1 No alias transcription factor (TUB) 0.05 Archaeplastida
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.02 Archaeplastida
Zm00001e028052_P001 No alias transcription factor (TUB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0046834 lipid phosphorylation IEP Neighborhood
BP GO:0046854 phosphatidylinositol phosphorylation IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000007 Tubby_C 61 345
IPR001810 F-box_dom 1 45
No external refs found!