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  5. GSVIVT01018205001

GSVIVT01018205001


Description : RNA biosynthesis.transcriptional activation.SBP transcription factor


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018205001
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00235390 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.08 Archaeplastida
AMTR_s00022p00198330 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.05 Archaeplastida
AMTR_s00047p00197010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.08 Archaeplastida
AMTR_s00106p00142470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.06 Archaeplastida
AMTR_s00106p00142740 evm_27.TU.AmTr_v1... No description available 0.07 Archaeplastida
AMTR_s00106p00144050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.05 Archaeplastida
AT1G02065 SPL8 squamosa promoter binding protein-like 8 0.08 Archaeplastida
AT2G42200 AtSPL9, SPL9 squamosa promoter binding protein-like 9 0.03 Archaeplastida
Cre02.g104700 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Cre02.g112750 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
Cre09.g390023 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
GSVIVT01018204001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
Gb_03922 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_15605 No alias transcription factor (SBP) 0.05 Archaeplastida
LOC_Os02g08070.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os04g46580.1 No alias transcription factor (SBP) 0.09 Archaeplastida
LOC_Os04g56170.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os06g44860.1 No alias transcription factor (SBP) 0.05 Archaeplastida
LOC_Os07g32170.1 No alias transcription factor (SBP) 0.08 Archaeplastida
LOC_Os08g39890.1 No alias transcription factor (SBP) 0.06 Archaeplastida
LOC_Os09g31438.1 No alias transcription factor (SBP) 0.07 Archaeplastida
LOC_Os09g32944.1 No alias transcription factor (SBP) 0.06 Archaeplastida
MA_10435426g0010 No alias transcription factor (SBP) 0.04 Archaeplastida
Pp3c16_7490V3.1 No alias squamosa promoter binding protein-like 2 0.03 Archaeplastida
Pp3c25_8610V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Pp3c4_6000V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Pp3c6_6900V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Smo79699 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
Solyc01g068100.4.1 No alias Squamosa promoter-binding-like protein 1 OS=Arabidopsis... 0.03 Archaeplastida
Solyc05g015840.3.1 No alias transcription factor (SBP) 0.18 Archaeplastida
Zm00001e003546_P002 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e010124_P002 No alias transcription factor (SBP) 0.06 Archaeplastida
Zm00001e010443_P001 No alias transcription factor (SBP) 0.06 Archaeplastida
Zm00001e013795_P002 No alias transcription factor (SBP) 0.06 Archaeplastida
Zm00001e018817_P003 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e021425_P001 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e021962_P003 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e021967_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e025234_P001 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e034537_P001 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e034628_P001 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e035060_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e041526_P001 No alias transcription factor (SBP) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 162 235
No external refs found!