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  5. GSVIVT01018886001

GSVIVT01018886001


Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000624 (Archaeplastida) Phylogenetic Tree(s): OG0000624_tree ,
OG_05_0000347 (LandPlants) Phylogenetic Tree(s): OG_05_0000347_tree ,
OG_06_0000255 (SeedPlants) Phylogenetic Tree(s): OG_06_0000255_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018886001
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT3G19500 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT4G29100 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
GSVIVT01010280001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.06 Archaeplastida
Gb_40387 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os01g13000.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os08g08160.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
MA_504223g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
Mp2g19970.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Smo28262 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
Solyc03g120530.3.1 No alias transcription factor (bHLH) 0.06 Archaeplastida
Solyc07g020960.3.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e005748_P002 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e010350_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e016395_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e034854_P002 No alias transcription factor (bHLH) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008172 S-methyltransferase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!