1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01019028001

GSVIVT01019028001


Description : Chromatin organisation.histone modifications.histone deacetylation.histone deacetylase machineries.SAP30 associated component


Gene families : OG0001164 (Archaeplastida) Phylogenetic Tree(s): OG0001164_tree ,
OG_05_0000888 (LandPlants) Phylogenetic Tree(s): OG_05_0000888_tree ,
OG_06_0002206 (SeedPlants) Phylogenetic Tree(s): OG_06_0002206_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01019028001
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AT1G19330 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 Archaeplastida
Gb_06121 No alias associated component SAP30 of histone deacetylase machineries 0.03 Archaeplastida
Gb_23696 No alias associated component SAP30 of histone deacetylase machineries 0.02 Archaeplastida
LOC_Os04g08450.3 No alias associated component SAP30 of histone deacetylase machineries 0.06 Archaeplastida
LOC_Os10g21460.1 No alias associated component SAP30 of histone deacetylase machineries 0.03 Archaeplastida
MA_26597g0010 No alias associated component SAP30 of histone deacetylase machineries 0.03 Archaeplastida
Solyc04g079930.3.1 No alias associated component SAP30 of histone deacetylase machineries 0.08 Archaeplastida
Solyc08g081310.4.1 No alias associated component SAP30 of histone deacetylase machineries 0.05 Archaeplastida
Zm00001e027006_P001 No alias associated component SAP30 of histone deacetylase machineries 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000930 gamma-tubulin complex IEP Neighborhood
CC GO:0000931 gamma-tubulin large complex IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
CC GO:0008274 gamma-tubulin ring complex IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
CC GO:0031011 Ino80 complex IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0031503 protein-containing complex localization IEP Neighborhood
CC GO:0033202 DNA helicase complex IEP Neighborhood
BP GO:0033566 gamma-tubulin complex localization IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034629 cellular protein-containing complex localization IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044450 microtubule organizing center part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
CC GO:0097346 INO80-type complex IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR025718 SAP30_Sin3-bd 175 227
No external refs found!