GSVIVT01019883001

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01019883001
Cluster	HCCA: Cluster_160

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00001p00267050	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00001p00270400	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00002p00262760	evm_27.TU.AmTr_v1...	No description available	0.04	Archaeplastida
AMTR_s00010p00214260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00017p00244900	evm_27.TU.AmTr_v1...	Floral homeotic protein PMADS 2 OS=Petunia hybrida	0.03	Archaeplastida
AMTR_s00047p00181740	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00047p00190220	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00071p00193200	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00071p00198970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT1G71692	XAL1, AGL12	AGAMOUS-like 12	0.05	Archaeplastida
AT2G22540	SVP, AGL22	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT3G54340	AP3, ATAP3	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT3G58780	AGL1, SHP1	K-box region and MADS-box transcription factor family protein	0.06	Archaeplastida
AT4G09960	STK, AGL11	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT4G11880	AGL14	AGAMOUS-like 14	0.03	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT5G15800	AGL2, SEP1	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT5G20240	PI	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT5G23260	AGL32, TT16, ABS	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.05	Archaeplastida
GSVIVT01008139001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01008140001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01009815001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01012250001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01018450001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01018839001	No alias	Floral homeotic protein DEFICIENS OS=Antirrhinum majus	0.04	Archaeplastida
GSVIVT01025945001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01033253001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01037022001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01038474001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Gb_03068	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Gb_03807	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_12581	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Gb_15398	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_41550	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os01g10504.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os02g07430.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os02g45770.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os03g08754.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os05g11380.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os05g34940.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g11970.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os08g41950.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os09g32948.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os10g39130.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os12g10540.3	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_10434339g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.02	Archaeplastida
MA_175522g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_25342g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_629987g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.02	Archaeplastida
MA_6544g0010	No alias	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.02	Archaeplastida
MA_9382435g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_9841429g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_9972589g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Pp3c12_22890V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Pp3c14_22180V3.1	No alias	AGAMOUS-like 104	0.02	Archaeplastida
Pp3c16_19170V3.1	No alias	AGAMOUS-like 61	0.03	Archaeplastida
Pp3c17_13070V3.1	No alias	AGAMOUS-like 66	0.03	Archaeplastida
Pp3c25_6940V3.1	No alias	AGAMOUS-like 62	0.03	Archaeplastida
Pp3c8_6920V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Solyc01g106710.1.1	No alias	component MED19 of head module of MEDIATOR transcription...	0.03	Archaeplastida
Solyc02g089210.4.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc02g091550.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc04g081000.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc05g012020.4.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc06g069430.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc07g055920.4.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc11g032100.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc12g056460.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e003667_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e013738_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e015924_P003	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e016964_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e019057_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e026007_P004	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e030373_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e031267_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e034629_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e036159_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e039774_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	Neighborhood
MF	GO:0005094	Rho GDP-dissociation inhibitor activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0008272	sulfate transport	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
MF	GO:0015116	sulfate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood
BP	GO:0072348	sulfur compound transport	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	3	50
IPR002487	TF_Kbox	78	165

External Links

No external refs found!

GSVIVT01019883001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation