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  5. GSVIVT01020033001

GSVIVT01020033001


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP I/II transcription factor


Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree ,
OG_06_0000101 (SeedPlants) Phylogenetic Tree(s): OG_06_0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020033001
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267430 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AT3G01220 ATHB20, HB20 homeobox protein 20 0.04 Archaeplastida
AT3G01470 ATHB1, ATHB-1,... homeobox 1 0.04 Archaeplastida
AT3G61890 HB-12, ATHB-12, ATHB12 homeobox 12 0.03 Archaeplastida
AT5G53980 ATHB52, HB52 homeobox protein 52 0.04 Archaeplastida
AT5G65310 ATHB5, ATHB-5, HB5 homeobox protein 5 0.02 Archaeplastida
AT5G66700 ATHB53, HB53, HB-8 homeobox 53 0.01 Archaeplastida
GSVIVT01027407001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Gb_04698 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
LOC_Os03g07450.1 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida
LOC_Os03g08960.1 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida
LOC_Os03g10210.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
LOC_Os07g39320.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
LOC_Os09g35910.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
LOC_Os10g26500.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
Pp3c11_23440V3.1 No alias homeobox 1 0.06 Archaeplastida
Pp3c17_18190V3.1 No alias homeobox protein 16 0.06 Archaeplastida
Pp3c1_36940V3.1 No alias homeobox protein 16 0.03 Archaeplastida
Pp3c1_37070V3.1 No alias homeobox protein 16 0.02 Archaeplastida
Pp3c3_37710V3.1 No alias homeobox 3 0.02 Archaeplastida
Pp3c5_27150V3.1 No alias homeobox protein 16 0.02 Archaeplastida
Pp3c6_2730V3.1 No alias Homeobox-leucine zipper protein family 0.04 Archaeplastida
Pp3c7_2100V3.1 No alias Homeobox-leucine zipper protein family 0.04 Archaeplastida
Pp3c8_440V3.1 No alias homeobox 3 0.02 Archaeplastida
Solyc01g010600.4.1 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Solyc02g067410.2.1 No alias transcription factor (HD-ZIP I/II) 0.05 Archaeplastida
Solyc02g086930.4.1 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Solyc02g087840.3.1 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Zm00001e000532_P002 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
Zm00001e002803_P001 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
Zm00001e004226_P001 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Zm00001e004824_P001 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Zm00001e038901_P001 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Neighborhood
MF GO:0004476 mannose-6-phosphate isomerase activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0004620 phospholipase activity IEP Neighborhood
MF GO:0004629 phospholipase C activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003106 Leu_zip_homeo 130 170
IPR001356 Homeobox_dom 75 128
No external refs found!