GSVIVT01020209001

Description : Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-1 trans-Golgi network cargo adaptor complex.AP1G large gamma subunit

Gene families : OG0003646 (Archaeplastida) Phylogenetic Tree(s): OG0003646_tree ,
OG_05_0003827 (LandPlants) Phylogenetic Tree(s): OG_05_0003827_tree ,
OG_06_0004999 (SeedPlants) Phylogenetic Tree(s): OG_06_0004999_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01020209001
Cluster	HCCA: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
AT1G23900	GAMMA-ADAPTIN 1,...	gamma-adaptin 1	0.06	Archaeplastida
AT1G60070	No alias	Adaptor protein complex AP-1, gamma subunit	0.02	Archaeplastida
Cpa\|evm.model.tig00000217.33	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.04	Archaeplastida
Cre16.g676650	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.07	Archaeplastida
Gb_02741	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.1	Archaeplastida
LOC_Os02g56110.1	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.07	Archaeplastida
LOC_Os06g07090.1	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.14	Archaeplastida
MA_10432717g0010	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.07	Archaeplastida
Mp2g02140.1	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.11	Archaeplastida
Pp3c17_4870V3.1	No alias	Adaptor protein complex AP-1, gamma subunit	0.06	Archaeplastida
Pp3c26_590V3.1	No alias	Adaptor protein complex AP-1, gamma subunit	0.09	Archaeplastida
Smo168054	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.1	Archaeplastida
Solyc04g025870.4.1	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.11	Archaeplastida
Solyc05g005780.3.1	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.18	Archaeplastida
Zm00001e023661_P002	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.09	Archaeplastida
Zm00001e030101_P002	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.2	Archaeplastida
Zm00001e036396_P001	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.12	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	Neighborhood
CC	GO:0000145	exocyst	IEP	Neighborhood
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005086	ARF guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005096	GTPase activator activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
BP	GO:0006606	protein import into nucleus	IEP	Neighborhood
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Neighborhood
BP	GO:0006913	nucleocytoplasmic transport	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
MF	GO:0008047	enzyme activator activity	IEP	Neighborhood
MF	GO:0008092	cytoskeletal protein binding	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
BP	GO:0009966	regulation of signal transduction	IEP	Neighborhood
BP	GO:0010646	regulation of cell communication	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015078	proton transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015672	monovalent inorganic cation transport	IEP	Neighborhood
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Neighborhood
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Neighborhood
CC	GO:0016459	myosin complex	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
MF	GO:0017056	structural constituent of nuclear pore	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
BP	GO:0022406	membrane docking	IEP	Neighborhood
BP	GO:0023051	regulation of signaling	IEP	Neighborhood
CC	GO:0030118	clathrin coat	IEP	Neighborhood
CC	GO:0030120	vesicle coat	IEP	Neighborhood
CC	GO:0030125	clathrin vesicle coat	IEP	Neighborhood
CC	GO:0030126	COPI vesicle coat	IEP	Neighborhood
CC	GO:0030127	COPII vesicle coat	IEP	Neighborhood
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Neighborhood
CC	GO:0030132	clathrin coat of coated pit	IEP	Neighborhood
MF	GO:0030234	enzyme regulator activity	IEP	Neighborhood
MF	GO:0030695	GTPase regulator activity	IEP	Neighborhood
CC	GO:0031011	Ino80 complex	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Neighborhood
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Neighborhood
CC	GO:0033179	proton-transporting V-type ATPase, V0 domain	IEP	Neighborhood
CC	GO:0033180	proton-transporting V-type ATPase, V1 domain	IEP	Neighborhood
CC	GO:0033202	DNA helicase complex	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034220	ion transmembrane transport	IEP	Neighborhood
BP	GO:0034504	protein localization to nucleus	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044448	cell cortex part	IEP	Neighborhood
CC	GO:0044454	nuclear chromosome part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
BP	GO:0048278	vesicle docking	IEP	Neighborhood
BP	GO:0048583	regulation of response to stimulus	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Neighborhood
BP	GO:0051169	nuclear transport	IEP	Neighborhood
BP	GO:0051170	import into nucleus	IEP	Neighborhood
BP	GO:0051640	organelle localization	IEP	Neighborhood
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Neighborhood
MF	GO:0061608	nuclear import signal receptor activity	IEP	Neighborhood
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Neighborhood
CC	GO:0097346	INO80-type complex	IEP	Neighborhood
BP	GO:0098655	cation transmembrane transport	IEP	Neighborhood
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Neighborhood
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
CC	GO:0099023	tethering complex	IEP	Neighborhood
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Neighborhood
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Neighborhood
BP	GO:0140029	exocytic process	IEP	Neighborhood
BP	GO:0140056	organelle localization by membrane tethering	IEP	Neighborhood
MF	GO:0140104	molecular carrier activity	IEP	Neighborhood
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Neighborhood
MF	GO:1901567	fatty acid derivative binding	IEP	Neighborhood
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Neighborhood
BP	GO:1902600	proton transmembrane transport	IEP	Neighborhood
CC	GO:1904949	ATPase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR008152	Clathrin_a/b/g-adaptin_app_Ig	761	875
IPR002553	Clathrin/coatomer_adapt-like_N	27	578

External Links

No external refs found!

GSVIVT01020209001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation