AMTR_s00040p00189460 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.185

Description : RNA biosynthesis.transcriptional activation.GRF-GIF transcriptional complex.GRF transcription factor component

Gene families : OG0000341 (Archaeplastida) Phylogenetic Tree(s): OG0000341_tree ,
OG_05_0000223 (LandPlants) Phylogenetic Tree(s): OG_05_0000223_tree ,
OG_06_0012849 (SeedPlants) Phylogenetic Tree(s): OG_06_0012849_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00040p00189460
Cluster	HCCA: Cluster_96

Target	Alias	Description	ECC score	Gene Family Method
AT2G06200	GRF6, AtGRF6	growth-regulating factor 6	0.03	Archaeplastida
AT2G22840	GRF1, AtGRF1	growth-regulating factor 1	0.04	Archaeplastida
AT2G36400	GRF3, AtGRF3	growth-regulating factor 3	0.03	Archaeplastida
AT2G45480	GRF9, AtGRF9	growth-regulating factor 9	0.04	Archaeplastida
AT3G13960	GRF5, AtGRF5	growth-regulating factor 5	0.06	Archaeplastida
AT4G37740	GRF2, AtGRF2	growth-regulating factor 2	0.05	Archaeplastida
GSVIVT01007165001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.01	Archaeplastida
GSVIVT01009299001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.05	Archaeplastida
GSVIVT01015095001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.08	Archaeplastida
GSVIVT01016762001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.07	Archaeplastida
GSVIVT01019667001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	Archaeplastida
GSVIVT01019913001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.05	Archaeplastida
GSVIVT01024326001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.09	Archaeplastida
GSVIVT01027535001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.01	Archaeplastida
GSVIVT01033800001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.06	Archaeplastida
GSVIVT01038629001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.06	Archaeplastida
Gb_05477	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Gb_20400	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Gb_20443	No alias	component GRF of GRF-GIF transcriptional complex	0.09	Archaeplastida
Gb_26136	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
LOC_Os02g45570.1	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida
LOC_Os02g47280.1	No alias	component GRF of GRF-GIF transcriptional complex	0.07	Archaeplastida
LOC_Os02g53690.1	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
LOC_Os03g47140.1	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
LOC_Os03g51970.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
LOC_Os04g48510.1	No alias	component GRF of GRF-GIF transcriptional complex	0.09	Archaeplastida
LOC_Os04g51190.1	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
LOC_Os06g02560.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
LOC_Os11g35030.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
LOC_Os12g29980.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
MA_111469g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.08	Archaeplastida
MA_137877g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.07	Archaeplastida
MA_18836g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.09	Archaeplastida
MA_33661g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
MA_88101g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
Mp8g16900.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Pp3c12_3720V3.1	No alias	growth-regulating factor 2	0.07	Archaeplastida
Pp3c17_1780V3.1	No alias	growth-regulating factor 2	0.04	Archaeplastida
Smo412762	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	Archaeplastida
Smo417311	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	Archaeplastida
Smo420739	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	Archaeplastida
Smo442384	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	Archaeplastida
Solyc01g091540.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
Solyc03g082430.1.1	No alias	component GRF of GRF-GIF transcriptional complex	0.12	Archaeplastida
Solyc04g077510.4.1	No alias	no hits & (original description: none)	0.09	Archaeplastida
Solyc07g041640.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.1	Archaeplastida
Solyc08g005430.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Solyc09g009200.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida
Solyc10g083510.2.1	No alias	component GRF of GRF-GIF transcriptional complex	0.07	Archaeplastida
Solyc12g096070.2.1	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
Zm00001e005165_P002	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
Zm00001e011207_P003	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida
Zm00001e012104_P002	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Zm00001e015436_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.07	Archaeplastida
Zm00001e015561_P002	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Zm00001e029851_P005	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
Zm00001e030774_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Zm00001e036224_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Zm00001e036657_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
MF	GO:0017048	Rho GTPase binding	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR014978	Gln-Leu-Gln_QLQ	70	105
IPR014977	WRC_dom	133	177

External Links

No external refs found!

AMTR_s00040p00189460 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation