GSVIVT01020543001

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2

Gene families : OG0000520 (Archaeplastida) Phylogenetic Tree(s): OG0000520_tree ,
OG_05_0003743 (LandPlants) Phylogenetic Tree(s): OG_05_0003743_tree ,
OG_06_0003746 (SeedPlants) Phylogenetic Tree(s): OG_06_0003746_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01020543001
Cluster	HCCA: Cluster_233

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00249150	evm_27.TU.AmTr_v1...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
AMTR_s00020p00246930	evm_27.TU.AmTr_v1...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.06	Archaeplastida
AMTR_s00068p00181410	evm_27.TU.AmTr_v1...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.11	Archaeplastida
AT5G45140	NRPC2	nuclear RNA polymerase C2	0.03	Archaeplastida
Cpa\|evm.model.tig00000158.16	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	Archaeplastida
Cpa\|evm.model.tig00020554.10	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.01	Archaeplastida
Cre02.g075150	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	Archaeplastida
Cre12.g542800	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
GSVIVT01036597001	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_30006	No alias	subunit 2 of Pol II RNA polymerase	0.04	Archaeplastida
LOC_Os03g44484.1	No alias	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum...	0.04	Archaeplastida
LOC_Os04g54840.1	No alias	subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V...	0.06	Archaeplastida
MA_10429035g0010	No alias	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum...	0.02	Archaeplastida
MA_10429035g0020	No alias	subunit 2 of Pol II RNA polymerase	0.07	Archaeplastida
MA_10429035g0030	No alias	DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis...	0.06	Archaeplastida
MA_10432131g0010	No alias	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum...	0.05	Archaeplastida
MA_342841g0010	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis...	0.03	Archaeplastida
Mp4g21160.1	No alias	subunit 2 of Pol II RNA polymerase	0.06	Archaeplastida
Mp6g06170.1	No alias	subunit 2 of Pol III RNA polymerase	0.02	Archaeplastida
Pp3c2_10910V3.1	No alias	DNA-directed RNA polymerase family protein	0.04	Archaeplastida
Smo148107	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.1	Archaeplastida
Smo443461	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
Solyc02g078260.3.1	No alias	subunit 2 of Pol II RNA polymerase	0.07	Archaeplastida
Solyc10g078860.2.1	No alias	subunit 2 of Pol III RNA polymerase	0.05	Archaeplastida
Zm00001e005007_P001	No alias	subunit 2 of Pol II RNA polymerase	0.07	Archaeplastida
Zm00001e006792_P001	No alias	subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V...	0.04	Archaeplastida
Zm00001e012400_P001	No alias	subunit 2 of Pol II RNA polymerase	0.09	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0004003	ATP-dependent DNA helicase activity	IEP	Neighborhood
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005669	transcription factor TFIID complex	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
MF	GO:0008026	ATP-dependent helicase activity	IEP	Neighborhood
MF	GO:0008094	DNA-dependent ATPase activity	IEP	Neighborhood
MF	GO:0008134	transcription factor binding	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044798	nuclear transcription factor complex	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
MF	GO:0070035	purine NTP-dependent helicase activity	IEP	Neighborhood
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007646	RNA_pol_Rpb2_4	572	633
IPR007645	RNA_pol_Rpb2_3	473	537
IPR007642	RNA_pol_Rpb2_2	209	400
IPR007647	RNA_pol_Rpb2_5	658	709
IPR007641	RNA_pol_Rpb2_7	1088	1179
IPR007120	DNA-dir_RNAP_su2_dom	716	1086
IPR007644	RNA_pol_bsu_protrusion	39	448

External Links

No external refs found!

GSVIVT01020543001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation