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  5. GSVIVT01020743001

GSVIVT01020743001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL11 component


Gene families : OG0001738 (Archaeplastida) Phylogenetic Tree(s): OG0001738_tree ,
OG_05_0001636 (LandPlants) Phylogenetic Tree(s): OG_05_0001636_tree ,
OG_06_0001883 (SeedPlants) Phylogenetic Tree(s): OG_06_0001883_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020743001
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00200160 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
AMTR_s00025p00203150 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 Archaeplastida
AT2G42740 RPL16A ribosomal protein large subunit 16A 0.14 Archaeplastida
AT3G58700 No alias Ribosomal L5P family protein 0.19 Archaeplastida
AT4G18730 RPL16B ribosomal protein L16B 0.38 Archaeplastida
AT5G45775 No alias Ribosomal L5P family protein 0.36 Archaeplastida
Cpa|evm.model.tig00020610.38 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
Cre01.g027000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.4 Archaeplastida
Gb_08546 No alias component RPL11 of LSU proteome component 0.16 Archaeplastida
LOC_Os01g10820.1 No alias component RPL11 of LSU proteome component 0.25 Archaeplastida
LOC_Os02g14059.1 No alias component RPL11 of LSU proteome component 0.09 Archaeplastida
LOC_Os05g11710.1 No alias component RPL11 of LSU proteome component 0.39 Archaeplastida
LOC_Os06g35730.1 No alias component RPL11 of LSU proteome component 0.42 Archaeplastida
MA_57785g0010 No alias 60S ribosomal protein L11-1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_74060g0010 No alias component RPL11 of LSU proteome component 0.16 Archaeplastida
MA_86694g0010 No alias component RPL11 of LSU proteome component 0.27 Archaeplastida
Mp2g24740.1 No alias component RPL11 of LSU proteome component 0.34 Archaeplastida
Mp6g18870.1 No alias component RPL11 of LSU proteome component 0.06 Archaeplastida
Pp3c11_8070V3.1 No alias ribosomal protein L16B 0.26 Archaeplastida
Pp3c1_7710V3.1 No alias ribosomal protein L16B 0.28 Archaeplastida
Pp3c27_2260V3.1 No alias Ribosomal L5P family protein 0.33 Archaeplastida
Pp3c2_33280V3.1 No alias ribosomal protein L16B 0.07 Archaeplastida
Pp3c5_3870V3.1 No alias Ribosomal L5P family protein 0.28 Archaeplastida
Pp3c7_20160V3.1 No alias ribosomal protein large subunit 16A 0.29 Archaeplastida
Smo444767 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
Solyc02g086240.3.1 No alias component RPL11 of LSU proteome component 0.33 Archaeplastida
Solyc07g055230.4.1 No alias component RPL11 of LSU proteome component 0.22 Archaeplastida
Solyc10g007980.3.1 No alias component RPL11 of LSU proteome component 0.27 Archaeplastida
Solyc12g010930.2.1 No alias component RPL11 of LSU proteome component 0.33 Archaeplastida
Zm00001e014363_P001 No alias no hits & (original description: none) 0.31 Archaeplastida
Zm00001e024913_P001 No alias component RPL11 of LSU proteome component 0.36 Archaeplastida
Zm00001e026886_P003 No alias component RPL11 of LSU proteome component 0.26 Archaeplastida
Zm00001e037255_P001 No alias component RPL11 of LSU proteome component 0.32 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031390 Ctf18 RFC-like complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR031310 Ribosomal_L5_N 1 52
IPR031309 Ribosomal_L5_C 56 154
No external refs found!