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  5. GSVIVT01020794001

GSVIVT01020794001


Description : Polygalacturonase OS=Nicotiana tabacum


Gene families : OG0000535 (Archaeplastida) Phylogenetic Tree(s): OG0000535_tree ,
OG_05_0000281 (LandPlants) Phylogenetic Tree(s): OG_05_0000281_tree ,
OG_06_0000124 (SeedPlants) Phylogenetic Tree(s): OG_06_0000124_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020794001
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00055750 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
GSVIVT01030019001 No alias No description available 0.04 Archaeplastida
GSVIVT01035102001 No alias Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana 0.04 Archaeplastida
LOC_Os01g33300.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.02 Archaeplastida
LOC_Os06g35320.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.02 Archaeplastida
LOC_Os06g40880.1 No alias Probable galacturan 1,4-alpha-galacturonidase SALK6... 0.04 Archaeplastida
Solyc01g009640.3.1 No alias No annotation 0.05 Archaeplastida
Solyc02g069480.3.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.06 Archaeplastida
Solyc10g047570.2.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.04 Archaeplastida
Solyc10g047590.3.1 No alias Polygalacturonase OS=Gossypium hirsutum... 0.06 Archaeplastida
Zm00001e002846_P002 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.02 Archaeplastida
Zm00001e017747_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.04 Archaeplastida
Zm00001e022246_P002 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.02 Archaeplastida
Zm00001e030526_P001 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 Archaeplastida
Zm00001e030532_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize : 345.0) 0.02 Archaeplastida
Zm00001e030542_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEA Interproscan
BP GO:0006468 protein phosphorylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 55 382
IPR001480 Bulb-type_lectin_dom 501 591
IPR001245 Ser-Thr/Tyr_kinase_cat_dom 887 962
IPR003609 Pan_app 760 795
No external refs found!