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  5. GSVIVT01020822001

GSVIVT01020822001


Description : DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana


Gene families : OG0000373 (Archaeplastida) Phylogenetic Tree(s): OG0000373_tree ,
OG_05_0007605 (LandPlants) Phylogenetic Tree(s): OG_05_0007605_tree ,
OG_06_0008692 (SeedPlants) Phylogenetic Tree(s): OG_06_0008692_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020822001
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00184140 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT1G06670 NIH nuclear DEIH-boxhelicase 0.04 Archaeplastida
Cpa|evm.model.tig00000786.1 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00021094.26 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Gb_05411 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.04 Archaeplastida
Gb_13707 No alias DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os03g53760.1 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.04 Archaeplastida
MA_10425930g0020 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 Archaeplastida
MA_10429367g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.04 Archaeplastida
MA_10434659g0010 No alias DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.06 Archaeplastida
MA_97917g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.05 Archaeplastida
Pp3c14_12310V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3c26_14400V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Smo50132 No alias DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc01g006970.4.1 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.08 Archaeplastida
Solyc01g103690.4.1 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.04 Archaeplastida
Zm00001e004608_P001 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e017082_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e028983_P004 No alias DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001374 R3H_dom 26 82
IPR011545 DEAD/DEAH_box_helicase_dom 194 343
IPR011709 DUF1605 889 977
IPR007502 Helicase-assoc_dom 729 848
IPR001650 Helicase_C 534 664
No external refs found!