GSVIVT01021523001

Description : KH domain-containing protein At4g18375 OS=Arabidopsis thaliana

Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0010954 (LandPlants) Phylogenetic Tree(s): OG_05_0010954_tree ,
OG_06_0005388 (SeedPlants) Phylogenetic Tree(s): OG_06_0005388_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01021523001
Cluster	HCCA: Cluster_181

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00092p00116010	evm_27.TU.AmTr_v1...	KH domain-containing protein At4g18375 OS=Arabidopsis thaliana	0.03	Archaeplastida
Cre17.g707400	No alias	No description available	0.02	Archaeplastida
Gb_03724	No alias	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
Gb_18830	No alias	RNA-binding KH domain-containing protein RCF3...	0.04	Archaeplastida
Gb_31686	No alias	RNA-binding KH domain-containing protein RCF3...	0.05	Archaeplastida
Gb_37521	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os01g13470.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.05	Archaeplastida
LOC_Os06g23460.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.04	Archaeplastida
LOC_Os08g10030.1	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.01	Archaeplastida
LOC_Os09g32300.1	No alias	KH domain-containing protein HEN4 OS=Arabidopsis...	0.02	Archaeplastida
MA_10430861g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.03	Archaeplastida
MA_12604g0010	No alias	RNA-binding KH domain-containing protein RCF3...	0.05	Archaeplastida
MA_6622g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.04	Archaeplastida
Mp3g04880.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
Solyc01g106020.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
Solyc02g067210.3.1	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.07	Archaeplastida
Solyc03g034200.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.06	Archaeplastida
Solyc03g082980.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
Solyc04g077060.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.05	Archaeplastida
Solyc08g048500.3.1	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.1	Archaeplastida
Zm00001e001825_P001	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e004486_P005	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e010096_P002	No alias	KH domain-containing protein HEN4 OS=Arabidopsis...	0.01	Archaeplastida
Zm00001e012623_P002	No alias	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
Zm00001e030716_P002	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
Zm00001e037033_P001	No alias	RNA-binding KH domain-containing protein RCF3...	0.07	Archaeplastida
Zm00001e039986_P003	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Neighborhood
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Neighborhood
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Neighborhood
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Neighborhood
MF	GO:0003916	DNA topoisomerase activity	IEP	Neighborhood
MF	GO:0003917	DNA topoisomerase type I activity	IEP	Neighborhood
MF	GO:0005096	GTPase activator activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
BP	GO:0006265	DNA topological change	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0016579	protein deubiquitination	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Neighborhood
MF	GO:0043015	gamma-tubulin binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Neighborhood
BP	GO:0070646	protein modification by small protein removal	IEP	Neighborhood
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Neighborhood
BP	GO:0071103	DNA conformation change	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004088	KH_dom_type_1	121	177
IPR004088	KH_dom_type_1	368	429
IPR004088	KH_dom_type_1	202	267

External Links

No external refs found!

GSVIVT01021523001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation