1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01021617001

GSVIVT01021617001


Description : RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF30/Yth1 component


Gene families : OG0002163 (Archaeplastida) Phylogenetic Tree(s): OG0002163_tree ,
OG_05_0005447 (LandPlants) Phylogenetic Tree(s): OG_05_0005447_tree ,
OG_06_0005316 (SeedPlants) Phylogenetic Tree(s): OG_06_0005316_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021617001
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00079840 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 Archaeplastida
Cpa|evm.model.tig00021522.4 No alias No description available 0.02 Archaeplastida
Cre24.g755647 No alias 30-kDa cleavage and polyadenylation specificity factor... 0.02 Archaeplastida
Gb_34616 No alias component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
LOC_Os06g46400.1 No alias component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
MA_10428531g0010 No alias component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.01 Archaeplastida
Mp6g15200.1 No alias component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
Solyc02g021760.3.1 No alias component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
Solyc02g070240.3.1 No alias component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Zm00001e012971_P001 No alias component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016681 oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007275 YTH_domain 174 308
No external refs found!