AMTR_s00040p00231210

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP IV transcription factor

Gene families : OG0000182 (Archaeplastida) Phylogenetic Tree(s): OG0000182_tree ,
OG_05_0000064 (LandPlants) Phylogenetic Tree(s): OG_05_0000064_tree ,
OG_06_0001940 (SeedPlants) Phylogenetic Tree(s): OG_06_0001940_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00040p00231210
Cluster	HCCA: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
AT3G03260	HDG8	homeodomain GLABROUS 8	0.04	Archaeplastida
AT4G04890	PDF2	protodermal factor 2	0.03	Archaeplastida
AT5G07260	No alias	START (StAR-related lipid-transfer) lipid-binding domain	0.02	Archaeplastida
GSVIVT01001986001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
LOC_Os09g35760.1	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
Pp3c2_10790V3.1	No alias	protodermal factor 2	0.03	Archaeplastida
Zm00001e036212_P002	No alias	transcription factor (HD-ZIP IV)	0.02	Archaeplastida
Zm00001e039947_P001	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
Zm00001e042218_P002	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0006721	terpenoid metabolic process	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	Neighborhood
BP	GO:0016114	terpenoid biosynthetic process	IEP	Neighborhood
MF	GO:0016744	transferase activity, transferring aldehyde or ketonic groups	IEP	Neighborhood
MF	GO:0042802	identical protein binding	IEP	Neighborhood
BP	GO:0043086	negative regulation of catalytic activity	IEP	Neighborhood
BP	GO:0044092	negative regulation of molecular function	IEP	Neighborhood
BP	GO:0050790	regulation of catalytic activity	IEP	Neighborhood
BP	GO:0065009	regulation of molecular function	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002913	START_lipid-bd_dom	317	541
IPR001356	Homeobox_dom	120	175

External Links

No external refs found!

AMTR_s00040p00231210

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation