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  5. GSVIVT01022126001

GSVIVT01022126001


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana


Gene families : OG0005140 (Archaeplastida) Phylogenetic Tree(s): OG0005140_tree ,
OG_05_0004209 (LandPlants) Phylogenetic Tree(s): OG_05_0004209_tree ,
OG_06_0006102 (SeedPlants) Phylogenetic Tree(s): OG_06_0006102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01022126001
Cluster HCCA: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
Pp3c3_17370V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida
Solyc02g090910.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006528 asparagine metabolic process IEP Neighborhood
BP GO:0006529 asparagine biosynthetic process IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 226 280
IPR000504 RRM_dom 5 63
IPR000504 RRM_dom 94 150
No external refs found!