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  5. GSVIVT01022217001

GSVIVT01022217001


Description : E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana


Gene families : OG0004941 (Archaeplastida) Phylogenetic Tree(s): OG0004941_tree ,
OG_05_0004941 (LandPlants) Phylogenetic Tree(s): OG_05_0004941_tree ,
OG_06_0010012 (SeedPlants) Phylogenetic Tree(s): OG_06_0010012_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01022217001
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00240720 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana 0.04 Archaeplastida
AT2G22010 RKP related to KPC1 0.03 Archaeplastida
MA_10429186g0010 No alias E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_61184g0010 No alias E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_8997746g0010 No alias E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.05 Archaeplastida
Mp6g14830.1 No alias E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.05 Archaeplastida
Pp3c1_33900V3.1 No alias related to KPC1 0.03 Archaeplastida
Zm00001e035603_P001 No alias E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
InterPro domains Description Start Stop
IPR019474 Ub_conjug_fac_E4_core 749 943
IPR003877 SPRY_dom 147 265
No external refs found!