1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01023241001

GSVIVT01023241001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL3 component


Gene families : OG0002284 (Archaeplastida) Phylogenetic Tree(s): OG0002284_tree ,
OG_05_0002131 (LandPlants) Phylogenetic Tree(s): OG_05_0002131_tree ,
OG_06_0002300 (SeedPlants) Phylogenetic Tree(s): OG_06_0002300_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023241001
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00060p00174830 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
AMTR_s00135p00091990 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
AT1G43170 RP1, RPL3A, emb2207, ARP1 ribosomal protein 1 0.12 Archaeplastida
AT1G61580 RPL3B, ARP2 R-protein L3 B 0.05 Archaeplastida
Cpa|evm.model.tig00000025.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Cre10.g417700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
Gb_35746 No alias component RPL3 of LSU proteome component 0.09 Archaeplastida
LOC_Os11g06750.1 No alias component RPL3 of LSU proteome component 0.11 Archaeplastida
LOC_Os12g07010.1 No alias component RPL3 of LSU proteome component 0.11 Archaeplastida
MA_10432758g0010 No alias component RPL3 of LSU proteome component 0.06 Archaeplastida
MA_124178g0010 No alias component RPL3 of LSU proteome component 0.11 Archaeplastida
Mp1g18990.1 No alias component RPL3 of LSU proteome component 0.1 Archaeplastida
Pp3c10_25460V3.1 No alias R-protein L3 B 0.05 Archaeplastida
Pp3c5_27000V3.1 No alias R-protein L3 B 0.04 Archaeplastida
Pp3c5_27030V3.1 No alias R-protein L3 B 0.06 Archaeplastida
Smo270706 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
Solyc01g104590.3.1 No alias component RPL3 of LSU proteome component 0.12 Archaeplastida
Zm00001e001224_P002 No alias component RPL3 of LSU proteome component 0.04 Archaeplastida
Zm00001e008122_P001 No alias component RPL3 of LSU proteome component 0.03 Archaeplastida
Zm00001e008127_P001 No alias component RPL3 of LSU proteome component 0.06 Archaeplastida
Zm00001e009061_P001 No alias component RPL3 of LSU proteome component 0.08 Archaeplastida
Zm00001e009065_P002 No alias component RPL3 of LSU proteome component 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 1 370
No external refs found!