GSVIVT01023325001

Description : Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.RecQ4A helicase component

Gene families : OG0000499 (Archaeplastida) Phylogenetic Tree(s): OG0000499_tree ,
OG_05_0006417 (LandPlants) Phylogenetic Tree(s): OG_05_0006417_tree ,
OG_06_0008906 (SeedPlants) Phylogenetic Tree(s): OG_06_0008906_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01023325001
Cluster	HCCA: Cluster_236

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00077p00186260	evm_27.TU.AmTr_v1...	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.03	Archaeplastida
Cre12.g490150	No alias	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.04	Archaeplastida
Gb_08699	No alias	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.06	Archaeplastida
Gb_33079	No alias	helicase component RecQ4A of RTR Holliday junction...	0.03	Archaeplastida
LOC_Os04g35420.1	No alias	helicase component RecQ4A of RTR Holliday junction...	0.03	Archaeplastida
LOC_Os07g48360.1	No alias	Mediator of RNA polymerase II transcription subunit 34...	0.03	Archaeplastida
MA_10427638g0020	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10429752g0010	No alias	no hits & (original description: none)	0.07	Archaeplastida
MA_10435954g0010	No alias	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.04	Archaeplastida
MA_10436537g0010	No alias	helicase component RecQ4A of RTR Holliday junction...	0.07	Archaeplastida
MA_30494g0010	No alias	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.03	Archaeplastida
Mp4g14290.1	No alias	helicase component RecQ4A of RTR Holliday junction...	0.07	Archaeplastida
Pp3c2_1760V3.1	No alias	RECQ helicase L4B	0.03	Archaeplastida
Solyc01g100280.4.1	No alias	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.07	Archaeplastida
Solyc01g103960.3.1	No alias	helicase component RecQ4A of RTR Holliday junction...	0.04	Archaeplastida
Zm00001e016051_P001	No alias	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004003	ATP-dependent DNA helicase activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008026	ATP-dependent helicase activity	None	Extended
MF	GO:0008094	DNA-dependent ATPase activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0043138	3'-5' DNA helicase activity	None	Extended
MF	GO:0043140	ATP-dependent 3'-5' DNA helicase activity	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0070035	purine NTP-dependent helicase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Neighborhood
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Neighborhood
BP	GO:0000725	recombinational repair	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0003909	DNA ligase activity	IEP	Neighborhood
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005680	anaphase-promoting complex	IEP	Neighborhood
BP	GO:0006302	double-strand break repair	IEP	Neighborhood
BP	GO:0006310	DNA recombination	IEP	Neighborhood
BP	GO:0016579	protein deubiquitination	IEP	Neighborhood
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Neighborhood
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Neighborhood
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood
BP	GO:0070646	protein modification by small protein removal	IEP	Neighborhood
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	441	607
IPR001650	Helicase_C	645	750
IPR002121	HRDC_dom	1009	1076
IPR032284	RecQ_Zn-bd	762	844
IPR018982	RQC_domain	851	967

External Links

No external refs found!

GSVIVT01023325001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation