GSVIVT01023340001

Description : Pentatricopeptide repeat-containing protein At2g45350, chloroplastic OS=Arabidopsis thaliana

Gene families : OG0036948 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0035296 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0032191 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01023340001
Cluster	HCCA: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method	Actions
GSVIVT01027634001	No alias	Pentatricopeptide repeat-containing protein At2g45350,...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0022857	transmembrane transporter activity	IEA	Interproscan
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan

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Type	GO Term	Name	Evidence	Source
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
MF	GO:0016830	carbon-carbon lyase activity	IEP	Neighborhood
MF	GO:0016831	carboxy-lyase activity	IEP	Neighborhood
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
MF	GO:0050080	malonyl-CoA decarboxylase activity	IEP	Neighborhood
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005828	MFS_sugar_transport-like	269	424
IPR002885	Pentatricopeptide_repeat	150	180
IPR002885	Pentatricopeptide_repeat	182	209
IPR002885	Pentatricopeptide_repeat	14	61
IPR002885	Pentatricopeptide_repeat	114	142

External Links

No external refs found!

GSVIVT01023340001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation