1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01023971001

GSVIVT01023971001


Description : Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023971001
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00076010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00014p00068600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g43980,... 0.03 Archaeplastida
AMTR_s00022p00127120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
AMTR_s00029p00204910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g19191,... 0.07 Archaeplastida
AMTR_s00032p00219990 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
AMTR_s00040p00098330 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00051p00085060 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g16610... 0.03 Archaeplastida
AMTR_s00056p00185560 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
AMTR_s00061p00127300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.04 Archaeplastida
AMTR_s00068p00031610 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
AMTR_s00111p00107400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
AMTR_s00122p00115170 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
AMTR_s00129p00082590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
AMTR_s00170p00032020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.13 Archaeplastida
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
AT1G69350 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT2G22410 SLO1 SLOW GROWTH 1 0.03 Archaeplastida
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT3G29230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.11 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT5G48910 LPA66 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
Cpa|evm.model.tig00001038.5 No alias No description available 0.02 Archaeplastida
Cre08.g358250 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.02 Archaeplastida
Gb_00601 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.04 Archaeplastida
Gb_02229 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_02379 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_05264 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_05554 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_06185 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_11220 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_11688 No alias OTP70 plastidial RNA splicing factor 0.03 Archaeplastida
Gb_11926 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_14172 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_14324 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
Gb_14867 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_16448 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.06 Archaeplastida
Gb_17076 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_17294 No alias RNA editing factor (MEF3) 0.03 Archaeplastida
Gb_18015 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_21949 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_23320 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_23678 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_25129 No alias RNA editing factor (ECD1) 0.04 Archaeplastida
Gb_25130 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
Gb_26526 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
Gb_26694 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_26816 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_27322 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_29872 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.07 Archaeplastida
Gb_30146 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_31374 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_32452 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_33210 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
Gb_37517 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_38158 No alias OTP70 plastidial RNA splicing factor 0.03 Archaeplastida
Gb_39402 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_40381 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_41341 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
LOC_Os02g50280.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
LOC_Os03g04390.1 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.04 Archaeplastida
LOC_Os03g58100.1 No alias RNA editing factor (OTP85) 0.03 Archaeplastida
LOC_Os03g59264.1 No alias lectin chaperone (CRT) 0.07 Archaeplastida
LOC_Os04g02850.1 No alias RNA editing factor (OTP84) 0.04 Archaeplastida
LOC_Os04g39410.1 No alias RNA editing factor (OTP86) 0.08 Archaeplastida
LOC_Os04g51350.1 No alias RNA editing factor (AEF1) 0.05 Archaeplastida
LOC_Os05g12130.1 No alias RNA editing factor (ECD1) 0.11 Archaeplastida
LOC_Os05g49920.1 No alias RNA editing factor (ECB2/VAC1) 0.11 Archaeplastida
LOC_Os05g50950.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.09 Archaeplastida
LOC_Os07g02280.1 No alias RNA editing factor (OTP80) 0.12 Archaeplastida
LOC_Os07g09370.1 No alias RNA editing factor (CRR28) 0.06 Archaeplastida
LOC_Os10g33730.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
LOC_Os12g01850.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os12g30620.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.05 Archaeplastida
MA_10164206g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_10431227g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_123466g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
MA_1673g0010 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
MA_175688g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.09 Archaeplastida
MA_31170g0010 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
MA_34492g0020 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
MA_43615g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_4438g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_525914g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_72886g0010 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.02 Archaeplastida
MA_8319g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_86628g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_86894g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_9526611g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
Pp3c17_5040V3.1 No alias mitochondrial editing factor 22 0.03 Archaeplastida
Pp3c22_1710V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Pp3c24_8560V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
Smo47998 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.04 Archaeplastida
Smo84657 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Smo95815 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.02 Archaeplastida
Solyc01g007850.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc01g095690.2.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.05 Archaeplastida
Solyc01g097670.4.1 No alias RNA editing factor (ECD1) 0.06 Archaeplastida
Solyc02g005280.1.1 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.05 Archaeplastida
Solyc02g088470.1.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.08 Archaeplastida
Solyc03g007840.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc03g025700.2.1 No alias OTP70 plastidial RNA splicing factor 0.05 Archaeplastida
Solyc03g111210.4.1 No alias RNA editing factor (OTP80) 0.06 Archaeplastida
Solyc03g119950.1.1 No alias RNA editing factor (ECB2/VAC1) 0.12 Archaeplastida
Solyc04g076800.3.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc05g006800.2.1 No alias Pentatricopeptide repeat-containing protein At1g59720,... 0.05 Archaeplastida
Solyc06g009500.1.1 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Solyc07g062820.1.1 No alias RNA editing factor (SEL1/PDM1) 0.05 Archaeplastida
Solyc07g065730.1.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.06 Archaeplastida
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.08 Archaeplastida
Solyc09g082450.1.1 No alias RNA editing factor (YS1) 0.05 Archaeplastida
Solyc11g008940.1.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.06 Archaeplastida
Solyc11g011860.1.1 No alias Pentatricopeptide repeat-containing protein At3g14330... 0.06 Archaeplastida
Solyc11g017370.3.1 No alias RNA editing factor (AEF1) 0.06 Archaeplastida
Solyc11g071370.1.1 No alias RNA editing factor (CLB19) 0.06 Archaeplastida
Solyc12g006575.1.1 No alias RNA editing factor (OTP82) 0.09 Archaeplastida
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.06 Archaeplastida
Zm00001e000523_P001 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.03 Archaeplastida
Zm00001e003605_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
Zm00001e004121_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e007042_P001 No alias RNA editing factor (AEF1) 0.05 Archaeplastida
Zm00001e011467_P004 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.04 Archaeplastida
Zm00001e011875_P001 No alias RNA editing factor (OTP85) 0.03 Archaeplastida
Zm00001e012691_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Zm00001e015440_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Zm00001e015727_P001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.06 Archaeplastida
Zm00001e016923_P001 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Zm00001e023498_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e029186_P001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.08 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.11 Archaeplastida
Zm00001e032499_P001 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e034445_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.06 Archaeplastida
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 394 440
IPR002885 Pentatricopeptide_repeat 90 136
IPR002885 Pentatricopeptide_repeat 494 540
IPR032867 DYW_dom 669 791
IPR002885 Pentatricopeptide_repeat 66 89
IPR002885 Pentatricopeptide_repeat 193 223
IPR002885 Pentatricopeptide_repeat 165 190
IPR002885 Pentatricopeptide_repeat 294 323
IPR002885 Pentatricopeptide_repeat 266 291
IPR002885 Pentatricopeptide_repeat 469 492
No external refs found!