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  5. GSVIVT01024207001

GSVIVT01024207001


Description : Cell cycle.interphase.DNA replication.preinitiation.MCM replicative DNA helicase complex.MCM4 component


Gene families : OG0006081 (Archaeplastida) Phylogenetic Tree(s): OG0006081_tree ,
OG_05_0007310 (LandPlants) Phylogenetic Tree(s): OG_05_0007310_tree ,
OG_06_0007818 (SeedPlants) Phylogenetic Tree(s): OG_06_0007818_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01024207001
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00128450 evm_27.TU.AmTr_v1... Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.17 Archaeplastida
AT2G16440 MCM4 Minichromosome maintenance (MCM2/3/5) family protein 0.15 Archaeplastida
Cpa|evm.model.tig00000144.164 No alias Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.08 Archaeplastida
Cre07.g316850 No alias Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.14 Archaeplastida
Gb_09191 No alias component MCM4 of MCM replicative DNA helicase complex 0.18 Archaeplastida
Gb_36024 No alias component MCM4 of MCM replicative DNA helicase complex 0.21 Archaeplastida
LOC_Os01g36390.1 No alias component MCM4 of MCM replicative DNA helicase complex 0.2 Archaeplastida
MA_10434231g0010 No alias DNA replication licensing factor MCM4 OS=Oryza sativa... 0.21 Archaeplastida
Mp3g02380.1 No alias component MCM4 of MCM replicative DNA helicase complex 0.14 Archaeplastida
Pp3c19_18510V3.1 No alias Minichromosome maintenance (MCM2/3/5) family protein 0.04 Archaeplastida
Solyc01g110130.3.1 No alias component MCM4 of MCM replicative DNA helicase complex 0.13 Archaeplastida
Zm00001e020755_P002 No alias No annotation 0.15 Archaeplastida
Zm00001e026379_P001 No alias component MCM4 of MCM replicative DNA helicase complex 0.18 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006270 DNA replication initiation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
CC GO:0000808 origin recognition complex IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003896 DNA primase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0005664 nuclear origin of replication recognition complex IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR033762 MCM_OB 230 359
IPR027925 MCM_N 135 216
IPR001208 MCM_dom 412 634
No external refs found!