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  5. GSVIVT01025046001

GSVIVT01025046001


Description : Cell wall.lignin.monolignol conjugation and polymerization.lignin laccase


Gene families : OG0000114 (Archaeplastida) Phylogenetic Tree(s): OG0000114_tree ,
OG_05_0000045 (LandPlants) Phylogenetic Tree(s): OG_05_0000045_tree ,
OG_06_0000178 (SeedPlants) Phylogenetic Tree(s): OG_06_0000178_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025046001
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00061860 evm_27.TU.AmTr_v1... Cell wall.lignin.monolignol conjugation and... 0.05 Archaeplastida
AMTR_s00012p00245710 evm_27.TU.AmTr_v1... Cell wall.lignin.monolignol conjugation and... 0.05 Archaeplastida
AMTR_s00023p00051360 evm_27.TU.AmTr_v1... Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.07 Archaeplastida
AMTR_s00029p00185120 evm_27.TU.AmTr_v1... Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.03 Archaeplastida
AMTR_s00045p00045490 evm_27.TU.AmTr_v1... Cell wall.lignin.monolignol conjugation and... 0.14 Archaeplastida
AMTR_s00055p00189700 evm_27.TU.AmTr_v1... Cell wall.lignin.monolignol conjugation and... 0.06 Archaeplastida
AMTR_s00055p00190270 evm_27.TU.AmTr_v1... Cell wall.lignin.monolignol conjugation and... 0.07 Archaeplastida
AMTR_s00069p00085210 evm_27.TU.AmTr_v1... Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.03 Archaeplastida
AT1G18140 LAC1, ATLAC1 laccase 1 0.03 Archaeplastida
AT2G29130 ATLAC2, LAC2 laccase 2 0.17 Archaeplastida
AT2G30210 LAC3 laccase 3 0.03 Archaeplastida
AT2G38080 LAC4, IRX12,... Laccase/Diphenol oxidase family protein 0.18 Archaeplastida
AT2G40370 LAC5 laccase 5 0.03 Archaeplastida
AT2G46570 LAC6 laccase 6 0.03 Archaeplastida
AT3G09220 LAC7 laccase 7 0.07 Archaeplastida
AT5G01190 LAC10 laccase 10 0.17 Archaeplastida
AT5G03260 LAC11 laccase 11 0.06 Archaeplastida
AT5G05390 LAC12 laccase 12 0.17 Archaeplastida
AT5G07130 LAC13 laccase 13 0.03 Archaeplastida
AT5G48100 TT10, LAC15, ATLAC15 Laccase/Diphenol oxidase family protein 0.03 Archaeplastida
AT5G58910 LAC16 laccase 16 0.05 Archaeplastida
AT5G60020 ATLAC17, LAC17 laccase 17 0.19 Archaeplastida
GSVIVT01001603001 No alias Laccase-14 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01001604001 No alias Laccase-14 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01001614001 No alias Laccase-14 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01012343001 No alias Laccase-14 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01018939001 No alias Laccase-11 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01025077001 No alias Cell wall.lignin.monolignol conjugation and... 0.05 Archaeplastida
GSVIVT01034139001 No alias Cell wall.lignin.monolignol conjugation and... 0.07 Archaeplastida
Gb_00462 No alias lignin laccase 0.08 Archaeplastida
Gb_11065 No alias Laccase-11 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_14613 No alias lignin laccase 0.03 Archaeplastida
Gb_14614 No alias Laccase-4 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Gb_23947 No alias Laccase-1 OS=Arabidopsis thaliana (sp|q9lms3|lac1_arath... 0.04 Archaeplastida
Gb_33400 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.07 Archaeplastida
Gb_34469 No alias Laccase-12 OS=Arabidopsis thaliana... 0.08 Archaeplastida
LOC_Os01g27700.1 No alias Putative laccase-1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os01g61160.1 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.07 Archaeplastida
LOC_Os01g62480.1 No alias lignin laccase 0.07 Archaeplastida
LOC_Os01g62490.1 No alias lignin laccase 0.04 Archaeplastida
LOC_Os03g16610.1 No alias lignin laccase 0.08 Archaeplastida
LOC_Os03g18640.1 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.04 Archaeplastida
LOC_Os05g38390.1 No alias Putative laccase-11 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
LOC_Os05g38420.1 No alias lignin laccase 0.06 Archaeplastida
LOC_Os11g01730.1 No alias Putative laccase-17 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
LOC_Os11g47390.1 No alias Laccase-21 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
LOC_Os12g01730.1 No alias Laccase-23 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
LOC_Os12g15920.1 No alias Laccase-25 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
MA_10191230g0010 No alias No annotation 0.04 Archaeplastida
MA_10427033g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_10430789g0010 No alias Putative laccase-5 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
MA_10432715g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_10432961g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10434084g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10434090g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10436564g0010 No alias Putative laccase-17 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_115430g0010 No alias Laccase-17 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_118833g0010 No alias lignin laccase 0.08 Archaeplastida
MA_122769g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_136989g0010 No alias Laccase-6 OS=Arabidopsis thaliana (sp|q9zpy2|lac6_arath... 0.03 Archaeplastida
MA_14240g0010 No alias Laccase-4 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_170004g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_185257g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_186173g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_192464g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_192698g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_19643g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_205016g0010 No alias Laccase-4 OS=Oryza sativa subsp. japonica... 0.07 Archaeplastida
MA_28768g0010 No alias Laccase-4 OS=Arabidopsis thaliana (sp|o80434|lac4_arath... 0.03 Archaeplastida
MA_33057g0010 No alias lignin laccase 0.04 Archaeplastida
MA_33288g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_414479g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_488981g0010 No alias Laccase-13 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_57140g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_63042g0010 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
MA_66348g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_7035458g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_75861g0010 No alias Laccase-1 OS=Arabidopsis thaliana (sp|q9lms3|lac1_arath... 0.03 Archaeplastida
MA_812936g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_8866650g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_897132g0010 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_9916300g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp3g20310.1 No alias Laccase-2 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Smo105894 No alias Laccase-4 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
Smo230356 No alias Laccase-4 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Smo95740 No alias Laccase-13 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Solyc02g062650.3.1 No alias Laccase-11 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc02g085110.4.1 No alias Laccase-11 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc02g085120.3.1 No alias Laccase-11 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc04g072280.3.1 No alias Laccase-14 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc05g043360.3.1 No alias Laccase-7 OS=Arabidopsis thaliana (sp|q9sr40|lac7_arath... 0.03 Archaeplastida
Solyc05g050540.4.1 No alias Laccase-6 OS=Arabidopsis thaliana (sp|q9zpy2|lac6_arath... 0.06 Archaeplastida
Solyc05g052340.4.1 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.14 Archaeplastida
Solyc05g052370.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Solyc05g052390.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc05g052400.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.14 Archaeplastida
Solyc06g048860.3.1 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.05 Archaeplastida
Solyc06g050530.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc06g076330.3.1 No alias lignin laccase 0.12 Archaeplastida
Solyc06g082240.2.1 No alias Laccase-3 OS=Arabidopsis thaliana (sp|q56yt0|lac3_arath... 0.04 Archaeplastida
Solyc07g049460.3.1 No alias Laccase-7 OS=Arabidopsis thaliana (sp|q9sr40|lac7_arath... 0.07 Archaeplastida
Solyc09g010990.3.1 No alias lignin laccase 0.14 Archaeplastida
Solyc09g011970.3.1 No alias no hits & (original description: none) 0.14 Archaeplastida
Solyc09g014240.4.1 No alias lignin laccase 0.15 Archaeplastida
Solyc09g150105.1.1 No alias lignin laccase 0.05 Archaeplastida
Solyc10g076830.2.1 No alias lignin laccase 0.14 Archaeplastida
Solyc10g085090.3.1 No alias No annotation 0.15 Archaeplastida
Solyc12g056820.2.1 No alias Laccase-15 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e001209_P001 No alias lignin laccase 0.12 Archaeplastida
Zm00001e001354_P001 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e015854_P001 No alias Putative laccase-9 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e019303_P001 No alias lignin laccase 0.13 Archaeplastida
Zm00001e019315_P001 No alias lignin laccase 0.04 Archaeplastida
Zm00001e019316_P001 No alias lignin laccase 0.14 Archaeplastida
Zm00001e019412_P001 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.08 Archaeplastida
Zm00001e023886_P001 No alias Putative laccase-9 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e023953_P001 No alias Laccase-23 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e028767_P001 No alias no hits & (original description: none) 0.09 Archaeplastida
Zm00001e028830_P002 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.07 Archaeplastida
Zm00001e031826_P001 No alias lignin laccase 0.14 Archaeplastida
Zm00001e039529_P002 No alias Laccase-25 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0055114 oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
BP GO:0001505 regulation of neurotransmitter levels IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP Neighborhood
MF GO:0004478 methionine adenosyltransferase activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006544 glycine metabolic process IEP Neighborhood
BP GO:0006546 glycine catabolic process IEP Neighborhood
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0009063 cellular amino acid catabolic process IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009071 serine family amino acid catabolic process IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Neighborhood
MF GO:0015020 glucuronosyltransferase activity IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016054 organic acid catabolic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0042133 neurotransmitter metabolic process IEP Neighborhood
BP GO:0042135 neurotransmitter catabolic process IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
BP GO:0046395 carboxylic acid catabolic process IEP Neighborhood
BP GO:0046500 S-adenosylmethionine metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901606 alpha-amino acid catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011706 Cu-oxidase_2 430 548
IPR011707 Cu-oxidase_3 26 138
IPR001117 Cu-oxidase 151 301
No external refs found!