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  5. GSVIVT01025050001

GSVIVT01025050001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL35 component


Gene families : OG0002158 (Archaeplastida) Phylogenetic Tree(s): OG0002158_tree ,
OG_05_0002518 (LandPlants) Phylogenetic Tree(s): OG_05_0002518_tree ,
OG_06_0003253 (SeedPlants) Phylogenetic Tree(s): OG_06_0003253_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025050001
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00034p00044200 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
AMTR_s00040p00225520 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
AT2G39390 No alias Ribosomal L29 family protein 0.3 Archaeplastida
AT3G09500 No alias Ribosomal L29 family protein 0.33 Archaeplastida
AT3G55170 No alias Ribosomal L29 family protein 0.11 Archaeplastida
AT5G02610 No alias Ribosomal L29 family protein 0.27 Archaeplastida
Cpa|evm.model.tig00000241.79 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
Cre14.g617900 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.3 Archaeplastida
LOC_Os02g30050.1 No alias component RPL35 of LSU proteome component 0.06 Archaeplastida
MA_10429159g0020 No alias component RPL35 of LSU proteome component 0.09 Archaeplastida
MA_37003g0010 No alias component RPL35 of LSU proteome component 0.09 Archaeplastida
MA_92240g0010 No alias component RPL35 of LSU proteome component 0.06 Archaeplastida
Mp3g07170.1 No alias component RPL35 of LSU proteome component 0.06 Archaeplastida
Mp6g05620.1 No alias component RPL35 of LSU proteome component 0.28 Archaeplastida
Pp3c13_5200V3.1 No alias Ribosomal L29 family protein 0.34 Archaeplastida
Pp3c26_13720V3.1 No alias Ribosomal L29 family protein 0.09 Archaeplastida
Pp3c3_2800V3.1 No alias Ribosomal L29 family protein 0.24 Archaeplastida
Pp3c4_30730V3.1 No alias Ribosomal L29 family protein 0.3 Archaeplastida
Smo419858 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
Smo438324 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
Smo79331 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
Solyc04g010240.3.1 No alias component RPL35 of LSU proteome component 0.37 Archaeplastida
Solyc06g075620.3.1 No alias component RPL35 of LSU proteome component 0.04 Archaeplastida
Zm00001e008428_P002 No alias component RPL35 of LSU proteome component 0.19 Archaeplastida
Zm00001e014607_P001 No alias component RPL35 of LSU proteome component 0.25 Archaeplastida
Zm00001e040695_P003 No alias component RPL35 of LSU proteome component 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR001854 Ribosomal_L29/L35 44 100
No external refs found!