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  5. GSVIVT01025432001

GSVIVT01025432001


Description : Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana


Gene families : OG0001329 (Archaeplastida) Phylogenetic Tree(s): OG0001329_tree ,
OG_05_0001146 (LandPlants) Phylogenetic Tree(s): OG_05_0001146_tree ,
OG_06_0001172 (SeedPlants) Phylogenetic Tree(s): OG_06_0001172_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025432001
Cluster HCCA: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
AT1G55310 SR33, At-SCL33,... SC35-like splicing factor 33 0.04 Archaeplastida
AT3G55460 SCL30, At-SCL30 SC35-like splicing factor 30 0.04 Archaeplastida
Gb_06441 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os02g15310.1 No alias SCL28/30/33 RNA splicing factor 0.04 Archaeplastida
LOC_Os12g38430.1 No alias SCL28/30/33 RNA splicing factor 0.04 Archaeplastida
Mp4g01880.1 No alias SCL28/30/33 RNA splicing factor 0.02 Archaeplastida
Pp3c6_9110V3.1 No alias SC35-like splicing factor 30A 0.03 Archaeplastida
Zm00001e002967_P002 No alias SCL28/30/33 RNA splicing factor 0.04 Archaeplastida
Zm00001e020950_P002 No alias SCL28/30/33 RNA splicing factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0035145 exon-exon junction complex IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 40 78
IPR000504 RRM_dom 90 133
No external refs found!