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  5. GSVIVT01025547001

GSVIVT01025547001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL4 component


Gene families : OG0002429 (Archaeplastida) Phylogenetic Tree(s): OG0002429_tree ,
OG_05_0002329 (LandPlants) Phylogenetic Tree(s): OG_05_0002329_tree ,
OG_06_0002237 (SeedPlants) Phylogenetic Tree(s): OG_06_0002237_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025547001
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00210590 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
AMTR_s00105p00023120 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
AT3G09630 No alias Ribosomal protein L4/L1 family 0.12 Archaeplastida
AT5G02870 No alias Ribosomal protein L4/L1 family 0.13 Archaeplastida
Cpa|evm.model.tig00022075.53 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Cre09.g397697 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
Gb_21885 No alias component RPL4 of LSU proteome component 0.03 Archaeplastida
LOC_Os03g58204.1 No alias component RPL4 of LSU proteome component 0.13 Archaeplastida
LOC_Os07g08330.1 No alias component RPL4 of LSU proteome component 0.1 Archaeplastida
MA_9991417g0010 No alias component RPL4 of LSU proteome component 0.08 Archaeplastida
Mp4g20310.1 No alias component RPL4 of LSU proteome component 0.1 Archaeplastida
Pp3c20_19140V3.1 No alias Ribosomal protein L4/L1 family 0.05 Archaeplastida
Pp3c23_6290V3.1 No alias Ribosomal protein L4/L1 family 0.02 Archaeplastida
Pp3c23_9380V3.1 No alias Ribosomal protein L4/L1 family 0.05 Archaeplastida
Pp3c24_3760V3.1 No alias Ribosomal protein L4/L1 family 0.07 Archaeplastida
Solyc09g007250.4.1 No alias component RPL4 of LSU proteome component 0.14 Archaeplastida
Solyc10g084350.2.1 No alias component RPL4 of LSU proteome component 0.13 Archaeplastida
Solyc10g086010.2.1 No alias component RPL4 of LSU proteome component 0.11 Archaeplastida
Zm00001e005988_P001 No alias component RPL4 of LSU proteome component 0.1 Archaeplastida
Zm00001e011456_P002 No alias component RPL4 of LSU proteome component 0.08 Archaeplastida
Zm00001e011869_P001 No alias component RPL4 of LSU proteome component 0.1 Archaeplastida
Zm00001e032938_P001 No alias component RPL4 of LSU proteome component 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
InterPro domains Description Start Stop
IPR025755 Ribos_L4_C_dom 220 292
IPR002136 Ribosomal_L4/L1e 27 124
IPR002136 Ribosomal_L4/L1e 146 205
No external refs found!