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  5. AMTR_s00041p00218480

AMTR_s00041p00218480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00041.245

Description : Probable amidase At4g34880 OS=Arabidopsis thaliana


Gene families : OG0001344 (Archaeplastida) Phylogenetic Tree(s): OG0001344_tree ,
OG_05_0001222 (LandPlants) Phylogenetic Tree(s): OG_05_0001222_tree ,
OG_06_0000752 (SeedPlants) Phylogenetic Tree(s): OG_06_0000752_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00041p00218480
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00211300 evm_27.TU.AmTr_v1... Probable amidase At4g34880 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00041p00212520 evm_27.TU.AmTr_v1... Probable amidase At4g34880 OS=Arabidopsis thaliana 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004150 dihydroneopterin aldolase activity IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006760 folic acid-containing compound metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
MF GO:0016872 intramolecular lyase activity IEP Neighborhood
BP GO:0042558 pteridine-containing compound metabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
InterPro domains Description Start Stop
IPR000120 Amidase 16 119
No external refs found!