GSVIVT01026952001

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor

Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0005281 (LandPlants) Phylogenetic Tree(s): OG_05_0005281_tree ,
OG_06_0004708 (SeedPlants) Phylogenetic Tree(s): OG_06_0004708_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01026952001
Cluster	HCCA: Cluster_56

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00216420	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.06	Archaeplastida
AMTR_s00053p00098350	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.05	Archaeplastida
AMTR_s00057p00173840	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
AMTR_s00071p00058700	evm_27.TU.AmTr_v1...	CHD3-type chromatin-remodeling factor PICKLE...	0.05	Archaeplastida
AMTR_s00086p00165640	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.08	Archaeplastida
AMTR_s00090p00148990	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.12	Archaeplastida
AMTR_s00148p00090060	evm_27.TU.AmTr_v1...	Helicase protein MOM1 OS=Arabidopsis thaliana	0.18	Archaeplastida
AT1G08060	MOM1, MOM	ATP-dependent helicase family protein	0.19	Archaeplastida
AT2G13370	CHR5	chromatin remodeling 5	0.15	Archaeplastida
AT2G25170	PKL, GYM, CHR6,...	chromatin remodeling factor CHD3 (PICKLE)	0.11	Archaeplastida
AT2G28290	SYD, CHR3	P-loop containing nucleoside triphosphate hydrolases...	0.19	Archaeplastida
AT2G46020	CHA2, CHR2, BRM, ATBRM	transcription regulatory protein SNF2, putative	0.18	Archaeplastida
AT3G06010	ATCHR12	Homeotic gene regulator	0.13	Archaeplastida
AT3G06400	CHR11	chromatin-remodeling protein 11	0.03	Archaeplastida
AT5G19310	No alias	Homeotic gene regulator	0.02	Archaeplastida
AT5G44800	PKR1, CHR4	chromatin remodeling 4	0.19	Archaeplastida
Cpa\|evm.model.tig00000128.11	No alias	ISWI chromatin-remodeling complex ATPase CHR17...	0.01	Archaeplastida
Cpa\|evm.model.tig00000217.25	No alias	Chromatin structure-remodeling complex protein SYD...	0.02	Archaeplastida
Cpa\|evm.model.tig00000350.9	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.01	Archaeplastida
Cpa\|evm.model.tig00000802.67	No alias	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cpa\|evm.model.tig00000983.26	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.05	Archaeplastida
Cpa\|evm.model.tig00020960.24	No alias	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.04	Archaeplastida
Cpa\|evm.model.tig00021623.13	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.04	Archaeplastida
Cre03.g179300	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.04	Archaeplastida
Cre07.g325700	No alias	ATP-dependent helicase BRM OS=Arabidopsis thaliana	0.07	Archaeplastida
Cre08.g377200	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.03	Archaeplastida
Cre09.g390000	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.02	Archaeplastida
Cre12.g508150	No alias	Chromatin organisation.chromatin remodeling...	0.04	Archaeplastida
Cre12.g537671	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana	0.04	Archaeplastida
Cre16.g647602	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.02	Archaeplastida
Gb_01673	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana...	0.13	Archaeplastida
Gb_05671	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.03	Archaeplastida
Gb_16961	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.09	Archaeplastida
Gb_27153	No alias	chromatin remodeling factor (Snf2)	0.07	Archaeplastida
Gb_35181	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.03	Archaeplastida
LOC_Os02g02050.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os05g05230.1	No alias	chromatin remodeling factor (Snf2)	0.06	Archaeplastida
LOC_Os06g01320.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.07	Archaeplastida
LOC_Os06g08480.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.04	Archaeplastida
LOC_Os07g31450.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.13	Archaeplastida
MA_102992g0020	No alias	Probable chromatin-remodeling complex ATPase chain...	0.04	Archaeplastida
MA_10427682g0010	No alias	no hits & (original description: none)	0.1	Archaeplastida
MA_10429361g0010	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.06	Archaeplastida
MA_10436824g0010	No alias	No annotation	0.13	Archaeplastida
MA_137856g0010	No alias	chromatin remodeling factor (Snf2)	0.08	Archaeplastida
MA_141135g0010	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.03	Archaeplastida
MA_637555g0010	No alias	ATP-dependent helicase BRM OS=Arabidopsis thaliana...	0.11	Archaeplastida
MA_8926002g0010	No alias	Chromatin structure-remodeling complex protein SYD...	0.09	Archaeplastida
MA_9572741g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
Mp1g05480.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.07	Archaeplastida
Mp1g17010.1	No alias	chromatin remodeling factor (Snf2)	0.09	Archaeplastida
Mp2g26680.1	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.06	Archaeplastida
Mp4g00040.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.05	Archaeplastida
Mp5g06580.2	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
Mp5g24460.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.04	Archaeplastida
Pp3c10_2280V3.1	No alias	chromatin remodeling 4	0.09	Archaeplastida
Pp3c11_18940V3.1	No alias	chromatin-remodeling protein 11	0.08	Archaeplastida
Pp3c13_14440V3.1	No alias	transcription regulatory protein SNF2, putative	0.09	Archaeplastida
Pp3c13_19680V3.1	No alias	chromatin remodeling 4	0.16	Archaeplastida
Pp3c14_90V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.16	Archaeplastida
Pp3c18_19040V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.02	Archaeplastida
Pp3c18_19045V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.05	Archaeplastida
Pp3c21_10800V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.18	Archaeplastida
Pp3c27_3890V3.1	No alias	Homeotic gene regulator	0.08	Archaeplastida
Pp3c3_15820V3.1	No alias	transcription regulatory protein SNF2, putative	0.04	Archaeplastida
Pp3c5_19940V3.1	No alias	chromatin remodeling 5	0.13	Archaeplastida
Pp3c6_10390V3.1	No alias	chromatin remodeling 5	0.07	Archaeplastida
Smo102849	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Smo155996	No alias	Chromatin organisation.chromatin remodeling...	0.04	Archaeplastida
Smo164481	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Smo177985	No alias	Chromatin organisation.chromatin remodeling...	0.07	Archaeplastida
Smo440558	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana	0.07	Archaeplastida
Smo440815	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.06	Archaeplastida
Solyc01g067390.4.1	No alias	chromatin remodeling factor (Iswi)	0.05	Archaeplastida
Solyc01g094800.4.1	No alias	chromatin remodeling factor (Snf2)	0.15	Archaeplastida
Solyc02g068560.3.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.15	Archaeplastida
Solyc06g010240.3.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.15	Archaeplastida
Solyc06g054560.3.1	No alias	chromatin remodeling factor (Iswi)	0.04	Archaeplastida
Solyc06g065730.3.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.09	Archaeplastida
Solyc11g062010.3.1	No alias	chromatin remodeling factor (Snf2)	0.16	Archaeplastida
Solyc12g099910.2.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.03	Archaeplastida
Zm00001e010722_P005	No alias	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e013442_P001	No alias	chromatin remodeling factor (Snf2)	0.15	Archaeplastida
Zm00001e026331_P001	No alias	chromatin remodeling factor (Iswi)	0.06	Archaeplastida
Zm00001e030969_P003	No alias	chromatin remodeling factor (Snf2)	0.09	Archaeplastida
Zm00001e036737_P001	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.13	Archaeplastida
Zm00001e040406_P002	No alias	chromatin remodeling factor (Snf2)	0.11	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Neighborhood
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Neighborhood
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Neighborhood
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Neighborhood
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Neighborhood
MF	GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity	IEP	Neighborhood
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004402	histone acetyltransferase activity	IEP	Neighborhood
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Neighborhood
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006473	protein acetylation	IEP	Neighborhood
BP	GO:0006475	internal protein amino acid acetylation	IEP	Neighborhood
BP	GO:0006606	protein import into nucleus	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	IEP	Neighborhood
BP	GO:0006913	nucleocytoplasmic transport	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
MF	GO:0008080	N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
MF	GO:0016407	acetyltransferase activity	IEP	Neighborhood
MF	GO:0016410	N-acyltransferase activity	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016573	histone acetylation	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Neighborhood
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0034504	protein localization to nucleus	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0043543	protein acylation	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0051169	nuclear transport	IEP	Neighborhood
BP	GO:0051170	import into nucleus	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	915	1211
IPR001650	Helicase_C	1242	1323
IPR014978	Gln-Leu-Gln_QLQ	488	521

External Links

No external refs found!

GSVIVT01026952001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation