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  5. GSVIVT01027212001

GSVIVT01027212001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL13 component


Gene families : OG0002427 (Archaeplastida) Phylogenetic Tree(s): OG0002427_tree ,
OG_05_0002444 (LandPlants) Phylogenetic Tree(s): OG_05_0002444_tree ,
OG_06_0003447 (SeedPlants) Phylogenetic Tree(s): OG_06_0003447_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027212001
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00239970 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 Archaeplastida
AMTR_s00029p00111280 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
AT3G49010 BBC1, RSU2, ATBBC1 breast basic conserved 1 0.44 Archaeplastida
AT5G23900 No alias Ribosomal protein L13e family protein 0.25 Archaeplastida
Cpa|evm.model.tig00020629.36 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.32 Archaeplastida
Cre14.g630100 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
LOC_Os03g37970.1 No alias component RPL13 of LSU proteome component 0.15 Archaeplastida
LOC_Os06g02510.2 No alias component RPL13 of LSU proteome component 0.36 Archaeplastida
MA_103031g0010 No alias no hits & (original description: none) 0.24 Archaeplastida
MA_10430790g0030 No alias component RPL13 of LSU proteome component 0.03 Archaeplastida
Mp1g04920.1 No alias component RPL13 of LSU proteome component 0.41 Archaeplastida
Mp2g19790.1 No alias component RPL13 of LSU proteome component 0.38 Archaeplastida
Pp3c10_7370V3.1 No alias breast basic conserved 1 0.21 Archaeplastida
Pp3c13_15900V3.1 No alias breast basic conserved 1 0.27 Archaeplastida
Pp3c14_3490V3.1 No alias breast basic conserved 1 0.04 Archaeplastida
Pp3c1_26280V3.1 No alias breast basic conserved 1 0.39 Archaeplastida
Pp3c3_21130V3.1 No alias breast basic conserved 1 0.03 Archaeplastida
Smo165483 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Smo266648 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
Solyc08g075700.3.1 No alias component RPL13 of LSU proteome component 0.44 Archaeplastida
Solyc12g096150.2.1 No alias component RPL13 of LSU proteome component 0.33 Archaeplastida
Zm00001e018804_P001 No alias component RPL13 of LSU proteome component 0.37 Archaeplastida
Zm00001e028430_P003 No alias component RPL13 of LSU proteome component 0.26 Archaeplastida
Zm00001e031172_P001 No alias component RPL13 of LSU proteome component 0.13 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 7 185
No external refs found!