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  5. GSVIVT01027348001

GSVIVT01027348001


Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0002437 (Archaeplastida) Phylogenetic Tree(s): OG0002437_tree ,
OG_05_0003524 (LandPlants) Phylogenetic Tree(s): OG_05_0003524_tree ,
OG_06_0004189 (SeedPlants) Phylogenetic Tree(s): OG_06_0004189_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027348001
Cluster HCCA: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
AT2G27100 SE C2H2 zinc-finger protein SERRATE (SE) 0.04 Archaeplastida
Cre13.g575900 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
Gb_07577 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.04 Archaeplastida
MA_10426519g0010 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.04 Archaeplastida
Mp1g23090.1 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.06 Archaeplastida
Pp3c16_11390V3.1 No alias C2H2 zinc-finger protein SERRATE (SE) 0.02 Archaeplastida
Pp3c25_7680V3.1 No alias C2H2 zinc-finger protein SERRATE (SE) 0.03 Archaeplastida
Solyc01g009090.3.1 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.07 Archaeplastida
Zm00001e013155_P002 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.07 Archaeplastida
Zm00001e021924_P001 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004743 pyruvate kinase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
MF GO:0030955 potassium ion binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0031420 alkali metal ion binding IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007042 Arsenite-R_2 452 583
IPR021933 DUF3546 206 287
No external refs found!