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  5. GSVIVT01027508001

GSVIVT01027508001


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP IV transcription factor


Gene families : OG0000182 (Archaeplastida) Phylogenetic Tree(s): OG0000182_tree ,
OG_05_0000064 (LandPlants) Phylogenetic Tree(s): OG_05_0000064_tree ,
OG_06_0001940 (SeedPlants) Phylogenetic Tree(s): OG_06_0001940_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027508001
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00089530 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT1G05230 HDG2 homeodomain GLABROUS 2 0.11 Archaeplastida
AT4G04890 PDF2 protodermal factor 2 0.03 Archaeplastida
AT4G21750 ATML1 Homeobox-leucine zipper family protein / lipid-binding... 0.02 Archaeplastida
LOC_Os06g10600.1 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
LOC_Os08g04190.1 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
MA_10318273g0010 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
MA_10374232g0010 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
MA_122121g0010 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
Solyc01g091630.3.1 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
Solyc03g098200.4.1 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Zm00001e002453_P001 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
Zm00001e006870_P004 No alias transcription factor (HD-ZIP IV) 0.07 Archaeplastida
Zm00001e015997_P002 No alias transcription factor (HD-ZIP IV) 0.06 Archaeplastida
Zm00001e023786_P003 No alias transcription factor (HD-ZIP IV) 0.06 Archaeplastida
Zm00001e034755_P001 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
Zm00001e036212_P002 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
Zm00001e039947_P001 No alias transcription factor (HD-ZIP IV) 0.06 Archaeplastida
Zm00001e041695_P001 No alias transcription factor (HD-ZIP IV) 0.09 Archaeplastida
Zm00001e042218_P002 No alias transcription factor (HD-ZIP IV) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 281 505
IPR001356 Homeobox_dom 113 168
No external refs found!