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  5. GSVIVT01027579001

GSVIVT01027579001


Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027579001
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00254030 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.08 Archaeplastida
AMTR_s00071p00198970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AT1G71692 XAL1, AGL12 AGAMOUS-like 12 0.03 Archaeplastida
AT3G66656 AGL91 AGAMOUS-like 91 0.02 Archaeplastida
AT4G22950 GL19, AGL19 AGAMOUS-like 19 0.04 Archaeplastida
GSVIVT01008560001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01038474001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
Gb_16301 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.04 Archaeplastida
LOC_Os02g36924.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os03g54170.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os04g52410.2 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os06g22540.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_10289256g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_15122g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_63212g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c12_22890V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Pp3c17_5920V3.1 No alias K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
Solyc04g076280.4.1 No alias MADS-box protein SVP OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc06g064840.4.1 No alias no description available(sp|f6i457|ag11c_vitvi : 172.0) 0.04 Archaeplastida
Solyc08g080100.4.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc10g044965.1.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc11g010570.2.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e003670_P002 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e013738_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e014926_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e022819_P002 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e038096_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006855 drug transmembrane transport IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015893 drug transport IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002487 TF_Kbox 84 172
IPR002100 TF_MADSbox 10 57
No external refs found!