1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01028038001

GSVIVT01028038001


Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0000056 (SeedPlants) Phylogenetic Tree(s): OG_06_0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028038001
Cluster HCCA: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267830 evm_27.TU.AmTr_v1... Nutrient uptake.iron uptake.regulation.IDF1 IRT1-ubiquitin ligase 0.04 Archaeplastida
AMTR_s00018p00191870 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00025p00229930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
AMTR_s00088p00040490 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT1G22500 No alias RING/U-box superfamily protein 0.08 Archaeplastida
AT1G49230 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT2G17450 RHA3A RING-H2 finger A3A 0.03 Archaeplastida
AT2G44578 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G03550 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G43430 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT4G00305 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G17245 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT4G17905 ATL4H RING/U-box superfamily protein 0.02 Archaeplastida
AT4G35480 RHA3B RING-H2 finger A3B 0.04 Archaeplastida
AT5G05280 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G06490 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT5G07040 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G20885 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G42200 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT5G53110 No alias RING/U-box superfamily protein 0.03 Archaeplastida
GSVIVT01008756001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
GSVIVT01019592001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.08 Archaeplastida
GSVIVT01027524001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
GSVIVT01028306001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_14777 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_14778 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Gb_26582 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_35043 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os01g11480.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os01g11500.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
LOC_Os01g20930.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os02g15100.1 No alias RING-H2 finger protein ATL40 OS=Arabidopsis thaliana... 0.06 Archaeplastida
LOC_Os02g33720.1 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os02g46100.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g52210.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os03g28080.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
LOC_Os03g44636.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os04g16970.1 No alias no hits & (original description: none) 0.01 Archaeplastida
LOC_Os04g49550.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os04g49700.1 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os05g15170.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
LOC_Os06g11450.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os06g34530.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os06g34560.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g38460.1 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
LOC_Os08g43670.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.01 Archaeplastida
LOC_Os08g44950.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
LOC_Os09g29310.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os09g30160.1 No alias ubiquitin protein ligase (XERICO) 0.05 Archaeplastida
LOC_Os09g36500.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os10g39450.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os10g39770.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.01 Archaeplastida
LOC_Os12g24490.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
MA_10244600g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10434759g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
MA_125507g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_17249g0010 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.06 Archaeplastida
MA_43543g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_61349g0010 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
MA_711804g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
Pp3c1_9560V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c22_17730V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.01 Archaeplastida
Pp3c4_30240V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c6_19030V3.1 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Pp3c9_3390V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo39820 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
Smo8844 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
Solyc01g081040.4.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc02g038805.1.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Solyc02g067700.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc02g083400.3.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc02g083660.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc03g112340.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc03g114090.1.1 No alias RING-H2-class E3 ligase 0.12 Archaeplastida
Solyc03g114190.1.1 No alias RING-H2 finger protein ATL56 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc03g123680.1.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Solyc04g014220.1.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Solyc06g061250.3.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc06g150136.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc08g076830.1.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc10g008080.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc10g011880.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc10g081780.3.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.02 Archaeplastida
Solyc10g081790.1.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Solyc11g005320.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc12g094690.1.1 No alias RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e002272_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e007103_P001 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Zm00001e014286_P001 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Zm00001e014709_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e015259_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e015495_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e017960_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e020958_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e022742_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023238_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Zm00001e039314_P001 No alias RING-H2-class E3 ligase 0.08 Archaeplastida
Zm00001e041370_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 108 151
No external refs found!