AT1G49200


Description : RING/U-box superfamily protein


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0008073 (SeedPlants) Phylogenetic Tree(s): OG_06_0008073_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G49200
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00161170 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
AMTR_s00056p00122930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G67856 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT3G14320 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.07 Archaeplastida
AT3G61550 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G38140 No alias RING/U-box superfamily protein 0.08 Archaeplastida
AT4G40070 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G17600 No alias RING/U-box superfamily protein 0.05 Archaeplastida
Cre01.g009101 No alias No description available 0.04 Archaeplastida
Cre01.g051700 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
Gb_14775 No alias RING-H2 finger protein ATL78 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Gb_14777 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_14788 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_23076 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os01g11460.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os01g11520.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os02g15060.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g35144.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g35347.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os02g35365.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os02g36300.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g37450.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os02g45780.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os03g57410.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os04g49000.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os04g49550.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os05g39260.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os06g45580.1 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os07g34180.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os09g36500.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os10g39770.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os12g02220.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os12g40460.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_10208579g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10436650g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_12363g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_126287g0010 No alias RING-H2 finger protein ATL78 OS=Arabidopsis thaliana... 0.08 Archaeplastida
MA_152783g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_214717g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_5319g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_6931619g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_8090362g0010 No alias Acetyl-CoA carboxylase 1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Pp3c17_13190V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c1_32230V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c23_1651V3.1 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.03 Archaeplastida
Pp3c4_30240V3.1 No alias TOXICOS EN LEVADURA 2 0.03 Archaeplastida
Pp3c5_4170V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo412609 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Smo96681 No alias Protein degradation.peptide tagging.Ubiquitin... 0.08 Archaeplastida
Solyc01g006910.4.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc05g055390.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc06g053640.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc09g066300.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc09g075320.1.1 No alias RING-H2-class E3 ligase 0.08 Archaeplastida
Solyc11g066510.3.1 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Zm00001e003126_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e003264_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003426_P001 No alias ubiquitin protein ligase (XERICO) 0.06 Archaeplastida
Zm00001e007956_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e010787_P001 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e011306_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e011901_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e013809_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e014764_P001 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e015470_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e015905_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e017509_P001 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e018028_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e021729_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e022538_P002 No alias NEP1-interacting protein-like 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e023234_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e024702_P002 No alias NEP1-interacting protein-like 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e029032_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e030102_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e032186_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e037108_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e041385_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e041409_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding ISS Interproscan
Type GO Term Name Evidence Source
MF GO:0001067 regulatory region nucleic acid binding IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006949 syncytium formation IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006970 response to osmotic stress IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007623 circadian rhythm IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009638 phototropism IEP Neighborhood
BP GO:0009639 response to red or far red light IEP Neighborhood
BP GO:0009648 photoperiodism IEP Neighborhood
BP GO:0009651 response to salt stress IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009723 response to ethylene IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0009734 auxin-activated signaling pathway IEP Neighborhood
BP GO:0009737 response to abscisic acid IEP Neighborhood
BP GO:0009739 response to gibberellin IEP Neighborhood
BP GO:0009751 response to salicylic acid IEP Neighborhood
BP GO:0009753 response to jasmonic acid IEP Neighborhood
BP GO:0009755 hormone-mediated signaling pathway IEP Neighborhood
BP GO:0009828 plant-type cell wall loosening IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010017 red or far-red light signaling pathway IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010114 response to red light IEP Neighborhood
BP GO:0010119 regulation of stomatal movement IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010600 regulation of auxin biosynthetic process IEP Neighborhood
BP GO:0014070 response to organic cyclic compound IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032350 regulation of hormone metabolic process IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042493 response to drug IEP Neighborhood
BP GO:0042752 regulation of circadian rhythm IEP Neighborhood
BP GO:0042754 negative regulation of circadian rhythm IEP Neighborhood
BP GO:0043433 negative regulation of DNA-binding transcription factor activity IEP Neighborhood
BP GO:0044092 negative regulation of molecular function IEP Neighborhood
MF GO:0044212 transcription regulatory region DNA binding IEP Neighborhood
BP GO:0046677 response to antibiotic IEP Neighborhood
BP GO:0046885 regulation of hormone biosynthetic process IEP Neighborhood
BP GO:0048511 rhythmic process IEP Neighborhood
BP GO:0048571 long-day photoperiodism IEP Neighborhood
BP GO:0048573 photoperiodism, flowering IEP Neighborhood
BP GO:0048574 long-day photoperiodism, flowering IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051090 regulation of DNA-binding transcription factor activity IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071478 cellular response to radiation IEP Neighborhood
BP GO:0071482 cellular response to light stimulus IEP Neighborhood
BP GO:0071489 cellular response to red or far red light IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090354 regulation of auxin metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097305 response to alcohol IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 135 178
No external refs found!