GSVIVT01028112001


Description : DNA damage response.DNA repair mechanisms.mismatch repair (MMR).MSH2-x mismatch repair heterodimers.MSH6 component


Gene families : OG0001515 (Archaeplastida) Phylogenetic Tree(s): OG0001515_tree ,
OG_05_0006028 (LandPlants) Phylogenetic Tree(s): OG_05_0006028_tree ,
OG_06_0005949 (SeedPlants) Phylogenetic Tree(s): OG_06_0005949_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028112001
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00029910 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.mismatch... 0.04 Archaeplastida
Cre05.g235750 No alias DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_07613 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.06 Archaeplastida
LOC_Os09g24220.1 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.04 Archaeplastida
MA_10429110g0010 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.04 Archaeplastida
Mp2g14640.1 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.04 Archaeplastida
Mp7g16850.1 No alias component MSH7 of MSH2-x mismatch repair heterodimers 0.03 Archaeplastida
Pp3c20_1350V3.1 No alias MUTS homolog 6 0.05 Archaeplastida
Zm00001e016678_P004 No alias component MSH7 of MSH2-x mismatch repair heterodimers 0.06 Archaeplastida
Zm00001e034087_P001 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004004 ATP-dependent RNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008186 RNA-dependent ATPase activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR007861 DNA_mismatch_repair_MutS_clamp 782 873
IPR007696 DNA_mismatch_repair_MutS_core 597 913
IPR007860 DNA_mmatch_repair_MutS_con_dom 430 565
IPR007695 DNA_mismatch_repair_MutS-lik_N 305 420
IPR000432 DNA_mismatch_repair_MutS_C 977 1168
No external refs found!