Description : DNA damage response.DNA repair mechanisms.mismatch repair (MMR).MSH2-x mismatch repair heterodimers.MSH6 component
Gene families : OG0001515 (Archaeplastida) Phylogenetic Tree(s): OG0001515_tree ,
OG_05_0006028 (LandPlants) Phylogenetic Tree(s): OG_05_0006028_tree ,
OG_06_0005949 (SeedPlants) Phylogenetic Tree(s): OG_06_0005949_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01028112001 | |
Cluster | HCCA: Cluster_123 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00003p00029910 | evm_27.TU.AmTr_v1... | DNA damage response.DNA repair mechanisms.mismatch... | 0.04 | Archaeplastida | |
Cre05.g235750 | No alias | DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
Gb_07613 | No alias | component MSH6 of MSH2-x mismatch repair heterodimers | 0.06 | Archaeplastida | |
LOC_Os09g24220.1 | No alias | component MSH6 of MSH2-x mismatch repair heterodimers | 0.04 | Archaeplastida | |
MA_10429110g0010 | No alias | component MSH6 of MSH2-x mismatch repair heterodimers | 0.04 | Archaeplastida | |
Mp2g14640.1 | No alias | component MSH6 of MSH2-x mismatch repair heterodimers | 0.04 | Archaeplastida | |
Mp7g16850.1 | No alias | component MSH7 of MSH2-x mismatch repair heterodimers | 0.03 | Archaeplastida | |
Pp3c20_1350V3.1 | No alias | MUTS homolog 6 | 0.05 | Archaeplastida | |
Zm00001e016678_P004 | No alias | component MSH7 of MSH2-x mismatch repair heterodimers | 0.06 | Archaeplastida | |
Zm00001e034087_P001 | No alias | component MSH6 of MSH2-x mismatch repair heterodimers | 0.08 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006298 | mismatch repair | IEA | Interproscan |
MF | GO:0030983 | mismatched DNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000151 | ubiquitin ligase complex | IEP | Neighborhood |
CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Neighborhood |
MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
MF | GO:0003724 | RNA helicase activity | IEP | Neighborhood |
MF | GO:0004003 | ATP-dependent DNA helicase activity | IEP | Neighborhood |
MF | GO:0004004 | ATP-dependent RNA helicase activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
MF | GO:0005096 | GTPase activator activity | IEP | Neighborhood |
CC | GO:0005634 | nucleus | IEP | Neighborhood |
CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
CC | GO:0005680 | anaphase-promoting complex | IEP | Neighborhood |
MF | GO:0008026 | ATP-dependent helicase activity | IEP | Neighborhood |
MF | GO:0008047 | enzyme activator activity | IEP | Neighborhood |
MF | GO:0008092 | cytoskeletal protein binding | IEP | Neighborhood |
MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Neighborhood |
MF | GO:0008186 | RNA-dependent ATPase activity | IEP | Neighborhood |
MF | GO:0015631 | tubulin binding | IEP | Neighborhood |
MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
MF | GO:0016887 | ATPase activity | IEP | Neighborhood |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
MF | GO:0030695 | GTPase regulator activity | IEP | Neighborhood |
CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Neighborhood |
MF | GO:0042623 | ATPase activity, coupled | IEP | Neighborhood |
MF | GO:0043015 | gamma-tubulin binding | IEP | Neighborhood |
CC | GO:0043226 | organelle | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
BP | GO:0051726 | regulation of cell cycle | IEP | Neighborhood |
MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | Neighborhood |
MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Neighborhood |
No external refs found! |