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  5. AMTR_s00043p00189790

AMTR_s00043p00189790 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00043.53

Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Snu13 component


Gene families : OG0001139 (Archaeplastida) Phylogenetic Tree(s): OG0001139_tree ,
OG_05_0004101 (LandPlants) Phylogenetic Tree(s): OG_05_0004101_tree ,
OG_06_0004972 (SeedPlants) Phylogenetic Tree(s): OG_06_0004972_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00043p00189790
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT4G12600 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.11 Archaeplastida
AT5G08180 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.16 Archaeplastida
AT5G20160 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.16 Archaeplastida
Cre06.g249250 No alias RNA processing.RNA modification.rRNA/tRNA... 0.07 Archaeplastida
Cre16.g690500 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
GSVIVT01008187001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 Archaeplastida
GSVIVT01015520001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
GSVIVT01016438001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.02 Archaeplastida
Gb_26398 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida
LOC_Os03g13800.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.12 Archaeplastida
LOC_Os06g16290.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.11 Archaeplastida
LOC_Os10g03540.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.02 Archaeplastida
MA_10201g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida
MA_141850g0010 No alias No annotation 0.03 Archaeplastida
MA_16906g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.08 Archaeplastida
MA_433779g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.09 Archaeplastida
MA_670271g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.04 Archaeplastida
MA_99460g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.09 Archaeplastida
Pp3c14_21860V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 Archaeplastida
Pp3c15_25080V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.07 Archaeplastida
Pp3c17_18010V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Archaeplastida
Pp3c17_18050V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.06 Archaeplastida
Pp3c9_25980V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Archaeplastida
Smo98161 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.07 Archaeplastida
Solyc12g038980.2.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.11 Archaeplastida
Zm00001e001004_P001 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.08 Archaeplastida
Zm00001e015712_P001 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.04 Archaeplastida
Zm00001e023454_P001 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 Archaeplastida
Zm00001e038611_P002 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.15 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004866 endopeptidase inhibitor activity IEP Neighborhood
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006417 regulation of translation IEP Neighborhood
BP GO:0006448 regulation of translational elongation IEP Neighborhood
BP GO:0006449 regulation of translational termination IEP Neighborhood
BP GO:0006452 translational frameshifting IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016530 metallochaperone activity IEP Neighborhood
MF GO:0016531 copper chaperone activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030414 peptidase inhibitor activity IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034248 regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
MF GO:0043022 ribosome binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043243 positive regulation of protein complex disassembly IEP Neighborhood
BP GO:0043244 regulation of protein complex disassembly IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
BP GO:0045727 positive regulation of translation IEP Neighborhood
BP GO:0045901 positive regulation of translational elongation IEP Neighborhood
BP GO:0045905 positive regulation of translational termination IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051130 positive regulation of cellular component organization IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051247 positive regulation of protein metabolic process IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:0061134 peptidase regulator activity IEP Neighborhood
MF GO:0061135 endopeptidase regulator activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 23 111
No external refs found!