1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01028584001

GSVIVT01028584001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NUG1/NSN1 regulatory GTPase


Gene families : OG0005153 (Archaeplastida) Phylogenetic Tree(s): OG0005153_tree ,
OG_05_0006836 (LandPlants) Phylogenetic Tree(s): OG_05_0006836_tree ,
OG_06_0006657 (SeedPlants) Phylogenetic Tree(s): OG_06_0006657_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028584001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00118420 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
AT3G07050 No alias GTP-binding family protein 0.16 Archaeplastida
Cpa|evm.model.tig00001215.14 No alias Guanine nucleotide-binding protein-like NSN1... 0.01 Archaeplastida
Cre12.g533050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 Archaeplastida
Gb_31371 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.09 Archaeplastida
LOC_Os01g27730.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.19 Archaeplastida
MA_19380g0010 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.04 Archaeplastida
Mp8g17210.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.13 Archaeplastida
Pp3c12_9000V3.1 No alias GTP-binding family protein 0.13 Archaeplastida
Pp3c16_1080V3.1 No alias GTP-binding family protein 0.12 Archaeplastida
Solyc06g083520.3.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.06 Archaeplastida
Solyc09g061430.3.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.17 Archaeplastida
Zm00001e004937_P002 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.15 Archaeplastida
Zm00001e012467_P001 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.14 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004177 aminopeptidase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR006073 GTP_binding_domain 270 349
IPR014813 Gnl3_N_dom 16 91
No external refs found!