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Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL13a component
Gene families : OG0002232 (Archaeplastida) Phylogenetic Tree(s): OG0002232_tree ,
OG_05_0002287 (LandPlants) Phylogenetic Tree(s): OG_05_0002287_tree ,
OG_06_0002922 (SeedPlants) Phylogenetic Tree(s): OG_06_0002922_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01028661001 | |
| Cluster | HCCA: Cluster_172 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00044p00144180 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | Archaeplastida | |
| AMTR_s00089p00040540 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.08 | Archaeplastida | |
| AT3G07110 | No alias | Ribosomal protein L13 family protein | 0.16 | Archaeplastida | |
| AT3G24830 | No alias | Ribosomal protein L13 family protein | 0.16 | Archaeplastida | |
| AT4G13170 | No alias | Ribosomal protein L13 family protein | 0.03 | Archaeplastida | |
| AT5G48760 | No alias | Ribosomal protein L13 family protein | 0.14 | Archaeplastida | |
| Cpa|evm.model.tig00000792.29 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.07 | Archaeplastida | |
| Cre12.g532550 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.02 | Archaeplastida | |
| GSVIVT01021080001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | Archaeplastida | |
| LOC_Os03g54890.1 | No alias | component RPL13a of LSU proteome component | 0.12 | Archaeplastida | |
| MA_186340g0010 | No alias | component RPL13a of LSU proteome component | 0.09 | Archaeplastida | |
| Mp2g08690.1 | No alias | component RPL13a of LSU proteome component | 0.14 | Archaeplastida | |
| Mp4g15790.1 | No alias | component RPL13a of LSU proteome component | 0.13 | Archaeplastida | |
| Pp3c11_17280V3.1 | No alias | Ribosomal protein L13 family protein | 0.06 | Archaeplastida | |
| Pp3c19_10330V3.1 | No alias | Ribosomal protein L13 family protein | 0.12 | Archaeplastida | |
| Pp3c1_15830V3.1 | No alias | Ribosomal protein L13 family protein | 0.09 | Archaeplastida | |
| Pp3c2_20550V3.1 | No alias | Ribosomal protein L13 family protein | 0.08 | Archaeplastida | |
| Pp3c7_12270V3.1 | No alias | Ribosomal protein L13 family protein | 0.06 | Archaeplastida | |
| Smo166650 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.06 | Archaeplastida | |
| Solyc05g053670.3.1 | No alias | component RPL13a of LSU proteome component | 0.14 | Archaeplastida | |
| Solyc09g091740.4.1 | No alias | component RPL13a of LSU proteome component | 0.17 | Archaeplastida | |
| Solyc12g098330.3.1 | No alias | no hits & (original description: none) | 0.14 | Archaeplastida | |
| Zm00001e005719_P002 | No alias | component RPL13a of LSU proteome component | 0.11 | Archaeplastida | |
| Zm00001e012017_P002 | No alias | component RPL13a of LSU proteome component | 0.14 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005622 | intracellular | IEP | Neighborhood |
| CC | GO:0005759 | mitochondrial matrix | IEP | Neighborhood |
| CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Neighborhood |
| CC | GO:0005840 | ribosome | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0008150 | biological_process | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
| MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043233 | organelle lumen | IEP | Neighborhood |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
| BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044429 | mitochondrial part | IEP | Neighborhood |
| CC | GO:0044432 | endoplasmic reticulum part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| CC | GO:0070013 | intracellular organelle lumen | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |