GSVIVT01028860001

Description : Probable polygalacturonase OS=Vitis vinifera

Gene families : OG0000349 (Archaeplastida) Phylogenetic Tree(s): OG0000349_tree ,
OG_05_0114317 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0092532 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01028860001
Cluster	HCCA: Cluster_209

Target	Alias	Description	ECC score	Gene Family Method
AT1G19170	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT3G06770	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT3G42950	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
AT5G41870	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
GSVIVT01028057001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.02	Archaeplastida
LOC_Os02g15690.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
LOC_Os05g50960.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
MA_10431597g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10436451g0020	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Pp3c19_14240V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c6_7160V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Smo78556	No alias	Probable polygalacturonase OS=Vitis vinifera	0.03	Archaeplastida
Solyc03g007950.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Solyc03g117750.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Solyc08g081480.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.05	Archaeplastida
Solyc09g075460.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Zm00001e021051_P001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Zm00001e023760_P001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Zm00001e026646_P002	No alias	no hits & (original description: none)	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0004143	diacylglycerol kinase activity	IEP	Neighborhood
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006813	potassium ion transport	IEP	Neighborhood
BP	GO:0007186	G-protein coupled receptor signaling pathway	IEP	Neighborhood
BP	GO:0007205	protein kinase C-activating G-protein coupled receptor signaling pathway	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015672	monovalent inorganic cation transport	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
BP	GO:0034220	ion transmembrane transport	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood
BP	GO:0071804	cellular potassium ion transport	IEP	Neighborhood
BP	GO:0071805	potassium ion transmembrane transport	IEP	Neighborhood
BP	GO:0098655	cation transmembrane transport	IEP	Neighborhood
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Neighborhood
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	147	266
IPR000743	Glyco_hydro_28	395	525

External Links

No external refs found!

GSVIVT01028860001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation